Sequence and organization of barley yellow dwarf virus genomic RNA

Miller, W.A., Waterhouse, P.M., & Gerlach, W.L. (1988) Sequence and organization of barley yellow dwarf virus genomic RNA. Nucleic Acids Research, 16(13), pp. 6097-6111.

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Abstract

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The nucleotide sequence of the genomic RNA of barley yellow dwarf virus, PAV serotype was determined except for the 5′-terminal base, and its genome organization deduced. The 5,677 nucleotide genome contains five large open reading frames (ORFs). The genes for the coat protein (1) and the putative viral RNA-dependent RNA polymerase were identified. The latter shows a striking degree of similarity to that of carnation mottle virus (CarMV). By comparison with corona- and retrovirus RNAs, it is proposed that a translational frameshift is involved in expression of the polymerase. An ORF encoding an Mr 49,797 protein (50K ORF) may be translated by in-frame readthrough of the coat protein stop codon. The coat protein, an overlapping 17K ORF, and a 3′ 6.7K ORF are likely to be expressed via subgenomic mRNAs. © 1988 IRL Press Limited.

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162 citations in Web of Science®
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ID Code: 65820
Item Type: Journal Article
Refereed: Yes
Additional Information: Articles free to read on journal website
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Keywords: DNA, virus RNA, amino acid sequence, article, conformation, genetics, molecular genetics, nucleotide sequence, plant virus, Base Sequence, Molecular Sequence Data, Nucleic Acid Conformation, Plant Viruses, RNA, Viral, Support, Non-U.S. Gov't
DOI: 10.1093/nar/16.13.6097
ISSN: 0305-1048
Subjects: Australian and New Zealand Standard Research Classification > BIOLOGICAL SCIENCES (060000)
Australian and New Zealand Standard Research Classification > BIOLOGICAL SCIENCES (060000) > GENETICS (060400)
Divisions: Current > Schools > School of Earth, Environmental & Biological Sciences
Current > QUT Faculties and Divisions > Science & Engineering Faculty
Deposited On: 08 Jan 2014 02:33
Last Modified: 17 May 2017 06:31

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