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**266**.## 1995

Besag, Julian, Green, Peter, Higdon, David, & Mengersen, Kerrie L. (1995) Bayesian Computation and Stochastic-Systems.

*Statistical Science*,*10*(1), pp. 3-41. 450

491

## 1996

Burrage, Kevin & Burrage, Pamela (1996) High strong order explicit Runge-Kutta methods for stochastic ordinary differential equations.

*Applied Numerical Mathematics*,*22*(1-3), pp. 81-101. 78

76

## 1997

Burrage, Kevin, Burrage, Pamela, & Belward, John (1997) A bound on the maximum strong order of stochastic Runge-Kutta methods for stochastic ordinary differential equations.

*BIT Numerical Mathematics*,*37*(4), pp. 771-780. 11

10

Skitmore, Martin & Kozan, Erhan (1997) Review of "Multiple Criteria Evaluation of Projects in Construction" by Edmundas Zavadskas, Friedel Peldschus and Arturas Kaklauskas, Technika, Vilnius 1994, 226 pp, ISBN 9986-05-046-4.

*Construction Management and Economics*,*15*(2), pp. 215-217. 16

## 1998

Burrage, Kevin & Burrage, Pamela (1998) General order conditions for stochastic Runge-Kutta methods for both commuting and non-commuting stochastic ordinary differential equation systems.

*Applied Numerical Mathematics*,*28*, pp. 161-177. 22

25

Kozan, Erhan & Higgins, A (1998) Modeling train delays in urban networks.

*Transportation Science*,*32*(4), pp. 346-357. 40

22

## 1999

Burrage, Kevin & Burrage, Pamela (1999) High strong order methods for non-commutative stochastic ordinary differential equation systems and the Magnus formula.

*Physica D Nonlinear Phenomena*,*133*(1 Apr), pp. 34-48. 16

17

Kozan, Erhan & Preston, Peter (1999) Genetic algorithms to schedule container transfers at multimodal terminals.

*International Transactions in Operational Research*,*6*(3), pp. 311-329.## 2000

Burrage, Kevin & Burrage, Pamela (2000) Order conditions of stochastic Runge-Kutta methods by B-series.

*SIAM Journal on Numerical Analysis*,*38*(5), pp. 1626-1646. 53

52

Burrage, Kevin, Burrage, Pamela, & Brugnano, L (2000) Adams-Type Methods for the Numerical Solution of Stochastic Ordinary Differential Equations.

*Bit (Lisse)*,*40*(3), pp. 451-470. 18

17

Burrage, Pamela, Burrage, Kevin, & Mitsui, Takemitsui (2000) Numerical solutions of stochastic differential equations – implementation and stability issues.

*Journal of Computational and Applied Mathematics*,*125*(1 Feb), pp. 171-182. 42

32

Kozan, Erhan (2000) Optimising container transfers at multimodal terminals.

*Mathematical and Computer Modelling*,*31*(10-12), pp. 235-243. 76

51

## 2001

McElwain, D. L. S., Pettet, G. J., Please, C. P., & Tindall, M. J. (2001) The migration of cells in multicell tumor spheroids.

*Bulletin of Mathematical Biology*,*63*(2), pp. 231-257. 85

84

## 2002

Liu, Shi Qiang & Ong, Hoong Liong (2002) A comparative study of algorithms for the flowshop scheduling problem.

*Asia Pacific Journal of Operational Research*,*19*(2), pp. 205-222. 19

17

## 2003

Burrage, Pamela & Burrage, Kevin (2003) A variable stepsize implementation for stochastic differential equations.

*SIAM Journal on Scientific Computing (SISC)*,*24*(3), pp. 848-864. 23

25

Ismail, Noor A., Pettitt, Anthony N., & Webster, Ronald A. (2003) 'Online' monitoring and retrospective analysis of hospital outcomes based on a scan statistic.

*Statistics in Medicine*,*22*(18), pp. 2861-2876. 14

12

Pasdunkorale Arachchige, Jayantha (2003)

*Accurate finite volume methods for the numerical simulation of transport in highly anistropic media.*PhD by Publication, Queensland University of Technology.## 2004

Burrage, Kevin, Burrage, Pamela, & Tian, Tianhai (2004) Numerical methods for strong solutions of stochastic differential equations : an overview.

*Royal Society of London. Proceedings A. Mathematical, Physical and Engineering Sciences*,*460*(2041), pp. 373-402. 60

50

Burrage, Kevin, Tian, Tianhai, & Burrage, Pamela (2004) A multi-scaled approach for simulating chemical reaction systems.

*Progress in Biophysics & Molecular Biology*,*85*(2-3), pp. 217-234. 223

54

Burrage, P., Herdiana, R, & Burrage, K. (2004) Adaptive stepsize based on control theory for stochastic differential equations.

*Journal of Computational and Applied Mathematics*,*170*(2), pp. 317-336. 14

11

Carletti, Margherita, Burrage, Kevin, & Burrage, Pamela (2004) Numerical simulation of stochastic ordinary differential equations in biomathematical modelling.

*Mathematics and Computers in Simulation*,*64*(2), pp. 271-277. 22

19

Liu, Shi Qiang & Kozan, Erhan (2004) Metaheuristics for minimizing the makespan of the dynamic shop scheduling problem.

*Advances in Engineering Software*,*36*(3), pp. 199-205. 26

20

Liu, Shi Qiang & Ong, Hoon Liong (2004) Metaheuristics for the mixed shop scheduling problem.

*Asia-Pacific Journal of Operational Research*,*21*(1), pp. 97-115. 10

11

Maini, Philip K., McElwain, Sean, & Leavesley, David I. (2004) Travelling waves in a wound healing assay.

*Applied Mathematics Letters*,*17*(5), pp. 575-580. 36

49

## 2005

Liu, Shi Qiang, Ong, Hoon Liong, & Ng, Kien Ming (2005) A fast tabu search algorithm for the group shop scheduling problem.

*Advances in Engineering Software*,*36*(8), pp. 533-539. 12

11

## 2006

Wilson, Cameron, Pettet, Graeme J., Chen, Gongfa, Mishra, Sanjay K., Steck, Roland, Wullschleger, Martin E., et al. (2006) Is callus formation optimised for fracture stability? A computational study. In

*Conference of the International Society for Fracture Repair, 10th*, 22-24 May 2006, Adelaide, Australia. 137

## 2008

Chen, Gongfa, Schmutz, Beat, Steck, Roland, Pearcy, Mark, Wullschleger, Martin, Wilson, Cameron, et al. (2008) Predicting the fatigue life of internal fracture fixation plates. In

*16th Congress of the European Society of Biomechanics*, 6 – 9 July 2008, Lucerne, Switzerland.Graves, Nicholas, Tong, Edward, Faddy, Malcolm J., & Whitby, Michael (2008) Comparison of two methods for attributing length of hospital stay to healthcare-acquired infection.

*Healthcare Infection*,*13*(4), pp. 111-119.Graves, Nicholas, Tong, Edward, Faddy, Malcolm J., & Whitby, Michael (2008) Comparison of two methods for attributing length of hospital stay to healthcare-acquired infection.

*Healthcare Infection*,*13*(4), pp. 111-119.Jarrad, Frith C., Wahren, Carl-Henrick, Williams, Richard, & Burgman, Mark (2008) Impacts of experimental warming and fire on phenology of subalpine open-heath species.

*Australian Journal of Botany*,*56*(8), pp. 617-629. 11

12

Landman, Kerry, Simpson, Matthew, & Pettet, Graeme J. (2008) Tactically-driven nonmonotone travelling waves.

*Physica D Nonlinear Phenomena*,*237*(5), pp. 678-691. 37

5

4

## 2009

Doelman, Arjen, van Heijster, Peter, & Kaper , Tasso J. (2009) Pulse dynamics in a three-component system : existence analysis.

*Journal of Dynamics and Differential Equations*,*21*(1), pp. 73-115. 10

8

Johnson, Sandra & Mengersen, Kerrie (2009) A Bayesian network approach to modelling temporal behaviour of Lyngbya majuscula bloom initiation. In Anderssen, R.S., Braddock, R.D., & Newham, L.T.H (Eds.)

*Proceedings of the 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation*, Modelling and Simulation Society of Australia and New Zealand and International Association for Mathematics and Computers in Simulation, Cairns, QLD, pp. 4255-4261. 7

Johnson, Sandra, Mengersen, Kerrie, Ahern, Col, Pointon, Shane, Vowles, Chris, & Ahern, Kathleen (2009) Integrating Bayesian Networks and a GIS-based Nutrient Hazard map of Lyngbya majuscula. In

*Queensland Coastal Conference 2009 : Waves of Change*, 12-15 May 2009, Sea World Resort, Gold Coast, Australia. 16

Liu, Shi Qiang & Kozan, Erhan (2009) Scheduling a flow-shop with combined buffer conditions.

*International Journal of Production Economics*,*117*(2), pp. 371-380. 12

7

Low Choy, Samantha, James, Allan, & Mengersen, Kerrie (2009) Expert elicitation and its interface with technology : a review with a view to designing Elicitator. In

*Expert elicitation and its interface with technology: a review with a view to designing Elicitator*, Modelling and Simulation Society of Australia and New Zealand Inc., Cairns, Queensland. 2

## 2010

Hoffmann, Ary A., Camac, James S., Williams, Richard J., Papst, Warwick, Jarrad, Frith, & Wahren, Carl-Henrik (2010) Phenological changes in six Australian subalpine plants in response to experimental warming and year-to-year variation.

*Journal Of Ecology*,*98*(4), pp. 927-937. 13

11

Morawska, Lidia, Mengersen, Kerrie, Wang, Hao, Tayphasavanh, Fengthong, Darasavong, Kongkeo, & Holmes, Nicholas S. (2010) Pollutant concentrations within households in Lao PDR and association with housing characteristics and occupants' activities.

*Environmental Science and Technology*,*45*(3), pp. 882-889. 2

1

Pelzer, E.S., Cunningham, K.A., Allan, J.J., Mengersen, K.L., Allan, J.M., Launchbury, T., et al. (2010) Microbial colonisation of follicular fluid : alterations in cytokine expression and adverse assisted reproductive technology outcomes.

*Journal of Reproductive Immunology*,*86*(1), pp. 30-31. 14

van Heijster, Peter, Doelman, A., Kaper, T.J., & Promislow, K. (2010) Front interactions in a three-component system.

*SIAM Journal on Applied Dynamical Systems (SIADS)*,*9*(2), pp. 292-332. 5

4

## 2011

Donald, Margaret, Alston, Clair L., Young, Rick R., & Mengersen, Kerrie L. (2011) A Bayesian analysis of an agricultural field trial with three spatial dimensions.

*Computational Statistics & Data Analysis*,*55*(12), pp. 3320-3332. 93

2

1

Drovandi, Christopher C. & Pettitt, Anthony N. (2011) Using approximate Bayesian computation to estimate transmission rates of nosocomial pathogens.

*Statistical Communications in Infectious Diseases*,*3*(1). 71

Fulford, G.R., Lee, X.J., Berman, D., & Hamilton, G.S. (2011) Interaction of myxomatosis and Rabbit Haemorrhagic Disease in wild rabbit. In Chan, F., Marinova, D, & Anderssen, R.S. (Eds.)

*MODSIM2011, 19th International Congress on Modelling and Simulation.*, Modelling and Simulation Society of Australia and New Zealand, Perth, WA, pp. 912-918.Kenley, Russell, Harfield, Toby, Hampson, Keith D., & Kozan, Erhan (2011) Greening procurement : a research agenda for optimizing mass-haul during linear infrastructure construction. In

*Proceedings of Construction challenges in the new decade : the 6th International Conference on Construction in the 21st Century (CITV-VI)*, Kuala Lumpur, Malaysia, pp. 235-240.Kozan, Erhan & Liu, Shi Qiang (2011) Operations research for mining : a classification and literature review.

*ASOR Bulletin*,*30*(1), pp. 2-23.Liu, F., Zhuang, P., & Burrage, K. (2011) Stability and convergence of implicit numerical methods for a class of fractional advection-dispersion models. In Jalili, Nader (Ed.)

*Proceedings of the ASME 2011 International Design Engineering Technical Conferences & Computers and Information in Engineering Conference*, ASME, Washington, DC, pp. 85-94.Liu, Shi Qiang & Kozan, Erhan (2011) Optimising a coal rail network under capacity constraints.

*Flexible Service and Manufacturing*,*23*, pp. 90-110. 1

1

Liu, Shi Qiang & Kozan, Erhan (2011) Scheduling Trains with Priorities : a no-wait blocking parallel-machine job-shop scheduling model.

*Transportation Science*,*45*(2), pp. 175-198. 14

11

Liu, Shi Qiang & Kozan, Erhan (2011) A hybrid shifting bottleneck procedure algorithm for the parallel-machine job-shop scheduling problem.

*Journal of the Operational Research Society*,*63*, pp. 168-182. 5

5

MacGillivray, Helen L. & Croft, Tony (2011) Understanding evaluation of learning support in mathematics and statistics.

*International Journal of Mathematical Education in Science and Technology*,*42*(2), pp. 189-212. 5

Mat Isa, Zaiton, Fulford, Glenn, & Kelson, Neil A. (2011) Simulation of phosphine flow in vertical grain storage : a preliminary numerical study.

*ANZIAM Journal*,*52*, C759-C772.McGrory, Clare A., Pettitt, Anthony N., Reeves, Robert, Griffin, Mark, & Dwyer, Mark (2011) Variational Bayes and the reduced dependence approximation for the autologistic model on an irregular grid with applications.

*Journal of Computational and Graphical Statistics*.Moores, Matthew T., Hargrave, Catriona Elizabeth, Harden, Fiona, & Mengersen, Kerrie (2011) Analysis of Cone-Beam CT using prior information. In

*SSAI Young Statisticians’ Conference*, July 14-15, 2011, UQ St Lucia, Queensland, Australia. (Unpublished) 29

Rajmokan, Mohana, Morton, Anthony, Mengersen, Kerrie, Hall, Lisa, & Waterhouse, M. (2011) Using a Bayesian network to model colonisation with Vancomycin Resistant Enterococcus (VRE). In

*Third Annual Conference of the Australasian Bayesian Network Modelling Society (ABNMS2011)*, 21-24 November 2011, Queensland University of Technology, Brisbane, QLD. 32

Stanaway, Mark, Mengersen, Kerrie, & Reeves, Robert (2011) Hierarchical Bayesian modelling of early detection surveillance for plant pest invasions.

*Environmental and Ecological Statistics*,*18*(3), pp. 569-591. 33

1

2

Yu, Qiang, Liu, Fawang, Turner, Ian, & Burrage, Kevin (2011) Analytical and numerical solutions of the space and time fractional bloch-torrey equation. In Jalili, Nader (Ed.)

*Proceedings of the ASME 2011 International Design Engineering Technical Conferences & Computers and Information in Engineering Conference*, Elsevier, Chicago, Illinois, pp. 1-10.## 2012

Adams, Matthew P., Mallet, Daniel G., & Pettet, Graeme J. (2012) A continuum model of the growth of engineered epidermal skin substitutes. In

*Proceedings of the 10th Biennial Engineering Mathematics and Applications Conference, The ANZIAM Journal*, Australia and New Zealand Industrial and Applied Mathematics, University of Technology Sydney, N.S.W, C90-C109. 68

Alcock, Jamie & Burrage, Kevin (2012) Stable strong order 1.0 schemes for solving stochastic ordinary differential equations.

*BIT Numerical Mathematics*,*52*(3), pp. 539-557. 74

1

1

Alhamdan, Ali, Bartlett, Harry, Dawson, Ed, Simpson, Leonie, & Wong, Kenneth Koon-Ho (2012) Slide attacks on the Sfinks stream cipher. In

*Proceedings of the 6th International Conference on Signal Processing and Communication Systems*, IEEE, Radisson Resort, Gold Coast, Qld. 36

Alhamdan, Ali, Bartlett, Harry, Simpson, Leonie, Dawson, Edward, & Wong, Kenneth Koon-Ho (2012) State convergence in the initialisation of the Sfinks stream cipher. In Pieprzyk, Josef & Thomborson, Clark (Eds.)

*Proceedings of the Tenth Australasian Information Security Conference (AISC 2012)*, Australian Computer Society Inc., RMIT University, Melbourne, VIC, pp. 32-27.Assareh, Hassan & Mengersen, Kerrie (2012) Change Point Estimation in Monitoring Survival Time.

*PLoS ONE*,*7*(3), e33630.Baker, Ruth & Simpson, Matthew (2012) Models of collective cell motion for cell populations with different aspect ratio : diffusion, proliferation and travelling waves.

*Physica A : Statistical Mechanics and its Applications*,*391*(14), pp. 3729-3750. 33

5

5

Barton, David N., Kuikka, Sakari, Varis, Olli, Uusitalo, Laura, Henriksen, Hans Jørgen, Borsuk, Mark, et al. (2012) Bayesian networks in environmental and resource management.

*Integrated Environmental Assessment and Management*,*8*(3), pp. 418-429. 9

Baumann, F., Henderson, R. D., Gareth Ridall, P., Pettitt, Anthony N., & McCombe, P. A. (2012) Quantitative studies of lower motor neuron degeneration in amyotrophic lateral sclerosis : Evidence for exponential decay of motor unit numbers and greatest rate of loss at the site of onset.

*Clinical Neurophysiology*,*123*(10), pp. 2092-2098. 5

6

Baumann, F., Henderson, R.D., Ridall, G., Pettitt, A.N., & McCombe, P.A. (2012) Use of Bayesian MUNE to show differing rate of loss of motor units in subgroups of ALS.

*Clinical Neurophysiology*,*123*(12), pp. 2446-2453. 2

3

Binder, Benjamin J., Ross, Joshua, & Simpson, Matthew (2012) A hybrid model for studying spatial aspects of infectious diseases.

*ANZIAM Journal*,*54*(1-2), pp. 37-49. 95

Burdett, Robert L., Kozan, Erhan, & Strickland, Christopher (2012) A practical approach for identifying expected solution performance and robustness in operations research applications.

*ASOR Bulletin*,*31*(2), pp. 1-28. 61

Burrage, K., Liu, F., Turner, I., & Anh, V. (2012) Two novel numerical methods for solving the two-dimensional fractional Fitzhugh-Nagumo-monodomain model. In Turner, Ian (Chair) (Ed.)

*The 16th Biennial Computational Techniques and Applications Conference*, 23 - 26 September, 2012, Brisbane, Queensland.Burrage, Kevin & Burrage, Pamela (2012) Low rank Runge-Kutta methods, symplecticity and stochastic Hamiltonian problems with additive noise.

*Journal of Computational and Applied Mathematics*,*236*(16), pp. 3920-3930. 74

3

2

Carr, Elliot J. (2012)

*Exponential integrators and a dual-scale model for wood drying.*(Unpublished) 44

Carr, Elliot Joseph, Moroney, Timothy J., & Turner, Ian (2012) Performance assessment of exponential Rosenbrock method for large systems of ODE.

*The ANZIAM Journal*,*54*, C102-C118. 108

Carr, Elliot Joseph, Turner, Ian, & Perré, Patrick (2012) A variable-stepsize Jacobian-free exponential integrator for simulating transport in heterogeneous porous media : application to wood drying.

*Journal of Computational Physics*,*233*, pp. 66-82. 1

1

Chen, C. M., Liu, F., Anh, V., & Turner, I. (2012) Numerical methods for solving a two-dimensional variable-order anomalous subdiffusion equation.

*Mathematics of Computation*,*81*(277), pp. 345-366. 11

Chen, C.M., Liu, F., Burrage, K., & Chen, Y. (2012) Numerical methods of the variable-order Rayleigh-Stokes problem for a heated generalized second grade fluid with fractional derivative.

*IMA Journal of Applied Mathematics*, pp. 1-21. 19

Chen, Carla, Mengersen, Kerrie, Ickstadt , Katja, & Keith, Jonathan M. (2012) A Bayesian regression model with variable selection for genome-wide association studies. In Alston, Clair, Mengersen, Kerrie, & Pettitt, Anthony N. (Eds.)

*Case Studies in Bayesian Statistical Modelling and Analysis.*John Wiley & Sons, UK, pp. 103-117.Chen, J., Liu, F., Anh, V., Shen, S., Liu, Q., & Liao, C. (2012) The analytical solution and numerical solution of the fractional diffusion-wave equation with damping.

*Applied Mathematics and Computation*,*219*(4), pp. 1737-1748. 89

3

3

Chen, J., Liu, F., Burrage, K., & Shen, S. (2012) Numerical simulation of a fractional mathematical model for epidermal wound healing. In Chen, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing.Chen, S., Liu, F., & Burrage, K. (2012) Numerical simulation of a new two-dimensional variable-order fractional percolation equation in non-homogeneous porous media. In Chen, Wen, Sun, HongGuang, & Balaenu, Dumitru (Eds.)

*The Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing, pp. 1-7.Clifford, Sam, Low-Choy, Samantha, Mengersen, Kerrie, & Morawska, Lidia (2012) Semi-parametric modelling of ultrafine particle number concentration. In

*ISBA2012*, 25-29 June 2012, Kyoto Terrsa, Kyoto. (Unpublished) 33

Cramb, Susanna, Mengersen, Kerrie, Turrell, Gavin, & Baade, Peter (2012) Spatial inequalities in colorectal and breast cancer survival : premature deaths and associated factors.

*Health and Place*,*18*(6), pp. 1412-1421. 94

2

2

Cramb, Susanna, Mengersen, Kerrie L., & Baade, Peter D. (2012) Using routinely collected cancer data to infer risk factor patterns.

*Asia-Pacific Journal of Clinical Oncology*,*8*(S3), Article 760.Dallaston, Michael C. & McCue, Scott W. (2012) New exact solutions for Hele-Shaw flow in doubly connected regions.

*Physics of Fluids*,*24*, 052101-1---14. 149

3

2

Dallaston, Michael C. & McCue, Scott W. (2012) An accurate numerical scheme for the contraction of a bubble in a Hele-Shaw cell.

*The ANZIAM Journal*,*54*, C309-C326. 22

Dangerfield, C.E., Kay, D., MacNamara, S., & Burrage, K. (2012) A boundary preserving numerical algorithm for the Wright-Fisher model with mutation.

*BIT Numerical Mathematics*,*52*(2), pp. 283-304. 55

1

Dangerfield, Ciara E., Kay, David, & Burrage, Kevin (2012) Modeling ion channel dynamics through reflected stochastic differential equations.

*Physical Review E : Statistical, Nonlinear, and Soft Matter Physics*,*85*(5), 051907-1. 79

6

5

Dargaville, Steven & Farrell, Troy W. (2012) A least squares based finite volume method for the Cahn-Hilliard and Cahn-Hilliard-reaction equations.

*Journal of Computational and Applied Mathematics*. (In Press)Donald, Margaret R., Strickland, Christopher, Alston, Clair L., Young, Rick, & Mengersen, Kerrie L. (2012) Comparison of three-dimensional profiles over time.

*Journal of Applied Statistics*. 32

Ellery, Adam & Hughes, Stephen (2012) Measuring the apparent size of the Moon with a digital camera.

*Physics Education*. 672

Ellery, Adam, Simpson, Matthew, McCue, Scott W., & Baker, Ruth (2012) Critical time scales for advection–diffusion–reaction processes.

*Physical Review E*,*85*(4). 117

6

6

Ellery, Adam, Simpson, Matthew, McCue, Scott W., & Baker, Ruth (2012) Moments of action provide insight into critical times for advection–diffusion–reaction processes.

*Physical Review E (PRE)*,*86*(3). 40

5

5

Farr, Anna Charisse, Kleinschmidt, Tristan, Yarlagadda, Prasad K., & Mengersen, Kerrie (2012) Wayfinding : a simple concept, a complex process.

*Transport Reviews*,*32*(6), pp. 715-743. 56

1

Farrell, Troy W., Knight, John H., Moroney, Timothy J., Hobson, Philip A., Turner, Ian W., & Fulford, Glenn R. (2012)

*The mathematical modelling of large-scale bagasse stockpiles.*[Working Paper] (Unpublished) 258

Flegg, Jennifer, Byrne, Helen, Flegg, Mark, & McElwain, D.L. Sean (2012) Wound healing angiogenesis : the clinical implications of a simple mathematical model.

*Journal of Theoretical Biology*,*300*, pp. 309-316. 106

3

3

Foo, Lee Kien, McGree, James, & Duffull, Stephen (2012) A general method to determine sampling windows for nonlinear mixed effects models with an application to population pharmacokinetic studies.

*Pharmaceutical Statistics*,*11*(4), pp. 325-333.Fulton, Christopher, Kayal, Mohsen, Vercelloni, Julie, Lison de Loma, Thierry, Bosserelle, Pauline, Chancerelle, Yannick, et al. (2012) Predator Crown-of-Thorns Starfish (Acanthaster planci) Outbreak, Mass Mortality of Corals, and Cascading Effects on Reef Fish and Benthic Communities.

*PLoS ONE*,*7*(10), e47363-e47363. 9

9

Hall, Joanne L., Rao, Asha, & Donovan, Diane (2012) Planar difference functions. In

*2012 IEEE International Symposium on Information Theory Proceedings (ISIT)*, IEEE Information Theory Society, Massachusetts Institute of Technology, Boston, MA, 1082 -1086. 22

Hall, Joanne L. & Stovicek, Jan (2012) Mutually unbiased bases as submodules and subspaces. In (Ed.)

*Proceedings of IEEE International Symposium on Information Theory*, IEEE, Massachusetts Institute of Technology, Boston, MA, 905 -909. 30

Hejazi, H., Moroney, T., & Liu, F. (2012) A comparison of finite difference and finite volume methods for solving the space fractional advection-dispersion equation with variable coefficients. In Turner, Ian (Chair) (Ed.)

*The 16th Biennial Computational Techniques and Applications Conference*, 23-26 September 2012 , Queensland University of Technology, Brisbane. (In Press)Hejazi, H., Moroney, T.J., & Liu, F. (2012) A finite volume method for solving the two-sided time-space fractional advection-dispersion equation. In Chen, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*The Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing.Huang, Xiaodong, Grace, Peter, Weier, Keith, & Mengersen, Kerrie (2012) Nitrous oxide emissions from subtropical horticultural soils : a time series analysis.

*Soil Research*,*50*(7), p. 596. 2

2

Jiang, H., Liu, F., Meerschaert, M.M., & McGough, R. (2012) Analytical solutions of the multi-term modified power law wave equations in a finite domain. In Chen, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*The Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing.Jiang, H., Liu, F., Turner, I., & Burrage, K. (2012) Analytical solutions for the multi-term time-fractional diffusion-wave/diffusion equations in a finite domain.

*Computers & Mathematics with Applications*,*64*(10), pp. 3377-3388. 196

8

8

Jiang, H., Liu, F., Turner, I., & Burrage, K. (2012) Analytical solutions for the multi-term time-space Caputo-Riesz fractional advection-diffusion equations on a finite domain.

*Journal of Mathematical Analysis and Applications*,*389*(2), pp. 1117-1127. 40

15

13

Johnston, Stuart, Simpson, Matthew, & Baker, Ruth (2012) Mean-field descriptions of collective migration with strong adhesion.

*Physical Review E*,*85*(5), 051922-1 . 31

7

7

Li, Changpin, Zeng, Fanhai, & Liu, Fawang (2012) Spectral approximations to the fractional integral and derivative.

*Fractional Calculus and Applied Analysis*,*15*(3), pp. 383-406. 14

14

Little, J. Paige, Pearcy, Mark J., & Adam, Clayton J. (2012) Patient-specific simulations of spinal deformity surgery. In Pearcy, Mark J. & Pettet, Graeme J. (Eds.)

*Conference and Workshop on Modelling and Computation in Musculoskeletal Engineering*, 12-15 November 2012, Queensland University of Technology, Brisbane, QLD. (Unpublished) 9

Liu, F., Meerschaert, M.M., McGough, R.J., Zhuang, P., & Liu, Q. (2012) Numerical methods for solving the multi-term time-fractional wave-diffusion equations. In Chen, Wen, Sung, HongGuang, & Baleanu, Dumitru (Eds.)

*The Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing.Liu, F., Zhuang, P., & Burrage, K. (2012) Numerical methods and analysis for a class of fractional advection-dispersion models.

*Computers and Mathematics with Applications*,*64*(10), pp. 2990-3007. 54

7

7

Liu, Fawang, Turner, Ian, Anh, Vo, & Gu, YuanTong (2012) An implicit RBF meshless method for a fractal mobile/immobile transport model. In Chen, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*The Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing.Liu, Shi Qiang & Kozan, Erhan (2012) Optimum utilisation of rolling stocks for iron ore mining industries.

*Advanced Materials Research*,*361*, pp. 1529-1534.Masoud, Mahmoud Mohammed Abd Alla, Kozan, Erhan, & Kent, Geoffrey Alan (2012) A new approach to automatically producing schedules for cane railways. In Bruce, Robin C. (Ed.)

*Proceedings of the 34th Conference of the Australian Society of Sugar Cane Technologists*, Australian Society of Sugar Cane Technologists, Novotel Palm Cove Resort, Cairns, QLD. 78

McCue, Scott W., Moroney, Timothy J., & Bunder, Judith (2012) Preface to the proceedings of the 16th Computational Techniques and Applications Conference.

*ANZIAM Journal*,*54*.McDonald, Paula K. & Jeanes, Emma (2012) Introduction. Locating men in the work-life nexus. In McDonald, Paula K. & Jeanes, Emma (Eds.)

*Men, wage work and family.*Routledge, New York, pp. 1-16.McGilchrist, P., Alston, C.L., Gardner, G.E., Thomson, K.L., & Pethick, D.W. (2012) Beef carcasses with larger eye muscle areas, lower ossification scores and improved nutrition have a lower incidence of dark cutting.

*Meat Science*,*92*(4), pp. 474-480.Mengersen, Kerrie, Quinlan, M. M., Whittle, P. J. L., Knight, J. D., Mumford, J. D., Wan Ismail, W. N., et al. (2012) Beyond compliance : project on an integrated systems approach for pest risk management in South East Asia.

*EPPO Bulletin*,*42*(1), pp. 109-116. 47

2

Menon, Shakti N., Flegg, Jennifer, McCue, Scott W., Schugart, Richard C., Dawson, Rebecca A., & McElwain, Sean (2012) Modelling the interaction of keratinocytes and fibroblasts during normal and abnormal wound healing processes.

*Proceedings of the Royal Society B*,*279*, pp. 3329-3338. 55

2

1

Moroney, Timothy J. & Yang, Qianqian (2012) Efficient preconditioning of the method of lines for solving nonlinear two-sided space-fractional diffusion equations. In

*The 5th Symposium on Fractional Differentiation and its Applications*, 14-17 May, 2012, Hohai University, Nanjing, China. 144

Ngo, S.T., Baumann, F., Ridall, Peter, Pettitt, Anthony N., Henderson, R. D., Bellingham, M. C., et al. (2012) The relationship between Bayesian motor unit number estimation and histological measurements of motor neurons in wild-type and SOD1 G93A mice.

*Clinical Neurophysiology*,*123*(10), pp. 2080-2091. 6

4

Oberman, Glen J. & Farrell, Troy W. (2012)

*Mathematical modelling of a pure liquid droplet suspended in a binary atmosphere.*[Working Paper] (Unpublished) 55

Plank, Michael & Simpson, Matthew (2012) Models of collective cell behaviour with crowding effects : comparing lattice-based and lattice-free approaches.

*Journal of the Royal Society Interface*. 21

5

5

Psaltis, Steven & Farrell, Troy W. (2012)

*A two dimensional Maxwell-Stefan electrolyte charge transfer model.*[Working Paper] (Unpublished) 24

Redman, Adam, Bailleres, H., Turner, I., & Perré, P. (2012) Mass transfer properties (permeability and mass diffusivity) of four australian hardwood species.

*BioResources*,*7*(3), pp. 3410-3424.Robson, Alex, Burrage, Kevin, & Leake, Mark C. (2012) Inferring diffusion in single live cells at the single-molecule level.

*Philosophical Transactions of the Royal Society B: Biological Sciences*,*368*(1611), p. 20120029. 2

3

Shen, S., Liu, F., Anh, V., Turner, I., & Chen, J. (2012) A novel numerical approximation for the space fractional advection-dispersion equation.

*IMA Journal of Applied Mathematics*, pp. 1-14. (In Press)Shen, S., Liu, F., Anh, V., Turner, I., & Chen, J. (2012) A second-order accurate numerical approximation for the Riesz space fractional advection-dispersion equation. In Chen, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*The Proceedings of the Fifth Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing.Shen, S., Liu, F., Chen, J., Turner, I., & Anh, V. (2012) Numerical techniques for the variable order time fractional diffusion equation.

*Applied Mathematics and Computation*,*218*(22), pp. 10861-10870. 142

5

3

Simpson, Matthew & Mercer, Geoff (2012) Editorial : infectious disease modelling.

*ANZIAM Journal*,*54*(1-2). 54

Song, J., Yu, Q., Liu, F., & Turner, I. (2012) A new implicit numerical method for the space and time fractional Bloch-Torrey equation. In Cheng, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing, pp. 1-9.Symonds, Michael, Bruza, Peter, Sitbon, Laurianne, & Turner, Ian (2012) A tensor encoding model for semantic processing. In

*The 21st ACM International Conference on Information and Knowledge Management*, ACM Digital Library, Sheraton, Maui, Hawaii. 110

Symonds, Michael, Bruza, Peter D., Zuccon, Guido, Sitbon, Laurianne, & Turner, Ian (2012) Is the unigram relevance model term independent? Classifying term dependencies in query expansion. In

*ADCS 2012*, ACM, University of Otago, Dunedin. 32

1

Wang, Xuebin & Liu, Fawang (2012) Analytical solutions for the two- and three-dimensional time-fractional telegraph equations by the method of separating variables. In Cheng, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*Proceedings of the Fifth Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing, China, pp. 1-6.White, Nicole, Johnson, Helen, & Silburn, Peter A. (2012) Dirichlet process mixture models for unsupervised clustering of symptoms in Parkinson's disease.

*Journal of Applied Statistics*. 11

Yang, Qianqian, Moroney, Timothy J., Liu, Fawang, & Turner, Ian (2012) Computationally efficient methods for solving time-variable-order time-space fractional reaction-diffusion equation. In

*5th IFAC Symposium on Fractional Differentiation and its Applications*, 14-17 May 2012, Hohai University, Nanjing, China. 204

Yang, Qianqian, Turner, Ian, Moroney, Timothy J., & Liu, Fawang (2012) A preconditioned Lanczos method for space-fractional reaction-diffusion equations on two-dimensional unstructured meshes. In Gu, YuanTong (Ed.)

*4th International Conference on Computational Methods (ICCM2012)*, 25-28 November 2012, Crowne Plaza, Gold Coast, QLD. 66

Yu, Q., Liu, F., Turner, I., & Burrage, K. (2012) A computationally effective alternating direction method for the space and time fractional Bloch–Torrey equation in 3-D.

*Applied Mathematics and Computation*,*219*(8), pp. 4082-4095. 24

5

4

Yu, Q., Liu, F., Turner, I., Burrage, K., & Vegh, V. (2012) The use of a Riesz fractional differential-based approach for texture enhancement in image processing. In Turner, Ian (Chair) (Ed.)

*The 16th Biennial Computational Techniques and Applications Conference*, 23 - 26 September, 2012 , Brisbane, Queensland.Yu, Qiang, Liu, Fawang, Turner, Ian, & Burrage, Kevin (2012) Alternating direction implicit numerical method for the space and time fractional Bloch-Torrey equation in 3-D. In Cheng, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*Proceedings of the Fifth Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing, China, pp. 1-8.Zhang, H., Liu, F., Phanikumar, M.S., & Meerschaert, M.M. (2012) Numerical analysis of the time variable fractional order mobile-immobile advection-dispersion model. In Chen, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*Proceedings of the 5th Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing.Zhuang, P., Liu, F., Anh, V., & Turner, I. (2012) The Galerkin finite element approximation of the fractional cable equation. In Cheng, Wen, Sun, HongGuang, & Baleanu, Dumitru (Eds.)

*The Proceedings of the Fifth Symposium on Fractional Differentiation and Its Applications*, Hohai University, Hohai University, Nanjing, pp. 1-8.van Heijster, Peter & Sandstede, Bjorn (2012) Coexistence of stable spots and fronts in a three-component FitzHugh-Nagumo system.

*RIMS Kokyuroku Bessatsu*,*B31*, pp. 135-155.## 2013

Al Mashrafi, Mufeed, Bartlett, Harry, Dawson, Ed, Simpson, Leonie, & Wong, Kenneth Koon-Ho (2013) Indirect message injection for MAC generation.

*Journal of Mathematical Cryptology*,*7*(3), pp. 253-277.Albert, Isabelle, Donnet, Sophie, Guihenneuc-Jouyaux, Chantal, Low-Choy, Samantha, Mengersen, Kerrie, & Rousseau, Judith (2013) Combining elicited expert knowledge into Bayesian priors. In

*Joint Statistical Meeting*, 3-8 August 2013, Montréal, Québec, Canada. (Unpublished) 29

Alhamdan, Ali, Bartlett, Harry, Dawson, Ed, Simpson, Leonie, & Wong, Kenneth Koon-Ho (2013) Slid pairs in the initialisation of the A5/1 stream cipher. In Thomborson, Clark & Parampalli, Udaya (Eds.)

*Proceedings of the 11th Australasian Information Security Conference (AISC 2013)*, Australian Computer Society Inc., Adelaide, SA, pp. 3-12. 72

Amarasinghe, Pradeep, Barnes, Paul H., Egodawatta, Prasanna, McGree, James, & Goonetilleke, Ashantha (2013) An approach for identifying the limit states of resilience of a water supply system. In Barnes, Paul H. & Goonetilleke, Ashantha (Eds.)

*The 9th Annual International Conference of the International Institute for Infrastructure Renewal and Reconstruction : Risk-informed Disaster Management : Planning for Response, Recovery & Resilience*, Queensland University of Technology, Brisbane, QLD. 167

Bartlett, Harry, ALMashrafi, Mufeed, Simpson, Leonie, Dawson, Edward, & Wong, Kenneth Koon-Ho (2013) A general model for MAC generation using direct injection.

*Lecture Notes in Computer Science [Information Security and Cryptology: 8th International Conference, Inscrypt 2012]*,*7763*, pp. 198-215. 42

Bellet, R. Nicole, Francis, Rebecca L, Jacob, Justin S, Healy, Karen M, Bartlett, Harold John Gregory, Adams, Lewis, et al. (2013) Timed Up and Go Tests in cardiac rehabilitation : reliability and comparison with the 6-minute walk test.

*Journal of Cardiopulmonary Rehabilitation & Prevention*,*33*(2), pp. 99-105.Binder, Benjamin J., Blyth, Mark G., & McCue, Scott W. (2013) Free-surface flow past arbitrary topography and an inverse approach for wave-free solutions.

*IMA Journal of Applied Mathematics*,*78*(4), pp. 685-696.Binder, Benjamin J. & Simpson, Matthew (2013) Quantifying spatial structure in experimental observations and agent-based simulations using pair-correlation functions.

*Physical Review E (Statistical, Nonlinear, and Soft Matter Physics)*,*88*(2), pp. 1-10. 30

1

1

Bodisco, Timothy A., Low Choy, Samantha, & Brown, Richard J. (2013) A Bayesian approach to the determination of ignition delay.

*Applied Thermal Engineering*,*60*(1-2), pp. 79-87.Bowden, Lucie, Simpson, Matthew, & Baker, Ruth (2013) Design and interpretation of cell trajectory assays.

*Journal of the Royal Society Interface*,*10*(88), pp. 1-12.Burdett, Robert & Kozan, Erhan (2013)

*Improved earthwork allocation planning for fuel consumption and emissions reduction in linear infrastructure construction – case study data.*(Unpublished) 15

Burdett, Robert L. & Kozan, Erhan (2013) Earthworks planning for road construction projects : a case study. In Kajewski, Stephen L., Manley , Karen, & Hampson, Keith D. (Eds.)

*Proceedings of the 19th CIB World Building Congress, Brisbane 2013: Construction and Society*, QUT Conference Proceedings, Brisbane Convention Centre, pp. 1-14. 175

Burdett, Robert L. & Kozan, Erhan (2013) A dynamic approach for evaluating earthwork hauls in construction. In

*Proceedings of Abstract and Papers of 14th Asia Pacific Industrial Engineering and Management Systems Conference 2013*, Asia Pacific Industrial Engineering and Management Society (APIEMS) , Cebu, Philippines , pp. 1-11. 39

Burdett, Robert L. & Kozan, Erhan (2013) A sensitivity analysis for predictive train timetables : quantifying the effect of delay by performance profiling. .

Carr, Elliot Joseph, Turner, Ian, & Perre, Patrick (2013) A dual-scale modelling approach for drying hygroscopic porous media.

*Multiscale Modeling and Simulation*,*11*(1), pp. 362-384. 64

Chen, C.M., Liu, F., Turner, I., Anh, V., & Chen, Y. (2013) Numerical approximation for a variable-order nonlinear reaction–subdiffusion equation.

*Numerical Algorithms*,*63*(2), pp. 265-290. 1

1

Chen, J., Liu, Fawang, Burrage, Kevin, & Shen, S. (2013) Numerical techniques for simulating a fractional mathematical model of epidermal wound healing.

*Journal of Applied Mathematics and Computing*,*41*(1-2), pp. 33-47. 1

Cusimano, Nicole, Burrage, Kevin, & Burrage, Pamela (2013) Fractional models for the migration of biological cells in complex spatial domains.

*The ANZIAM Journal*,*54*, C250-C270. 30

Dalglish, Carol L., Tonelli, Marcello, Armstrong, Kathleen, & Johnson, Helen (2013) Supporting an NGO in Developing Mozambique. In Mueller, Jens, Franklin, Rhonda, & Warrick, Don (Eds.)

*Non-Profit Excellence : Learning from Worldwide Best Practice Cases.*RossiSmith Academic Publications, Oxford, pp. 41-54.Dallaston, Michael C. (2013)

*Mathematical models of bubble evolution in a Hele-Shaw Cell.*PhD by Publication, Queensland University of Technology. 150

Dallaston, Michael C. & McCue, Scott W. (2013) Bubble extinction in Hele-Shaw flow with surface tension and kinetic undercooling regularisation.

*Nonlinearity*,*26*(6), pp. 1639-1665. 125

2

1

Dargaville, Steven (2013)

*Mathematical modelling of LiFePO4 cathodes.*PhD thesis, Queensland University of Technology.Dargaville, Steven & Farrell, Troy W. (2013) The persistence of phase-separation in LiFePO4 with two-dimensional Li+ transport : the Cahn-Hilliard-reaction equation and the role of defects.

*Electrochimica Acta*,*94*(1), pp. 143-158. 83

5

4

Dorr, Gary J., Kempthorne, Daryl, Mayo, Lisa C., Forster, W. Alison, Zabkiewicz, Jerzy A., McCue, Scott W., et al. (2013) Towards a model of spray-canopy interactions : interception, shatter, bounce and retention of droplets on horizontal leaves.

*Ecological Modelling*. (In Press)Drovandi, Christopher C. & Pettitt, Anthony N. (2013) Bayesian experimental design for models with intractable likelihoods.

*Biometrics*,*69*(4), pp. 937-948. 1

Dólleman, M., Faddy, M. J., van Disseldorp, J., van der Schouw, Y. T., Messow, C. M., Leader, B., et al. (2013) The relationship between anti-mullerian hormone in women receiving fertility assessments and age at menopause in subfertile women : evidence from large population studies.

*Journal of Clinical Endocrinology & Metabolism*,*98*, pp. 1-8. 3

2

Ellery, Adam, Simpson, Matthew, McCue, Scott W., & Baker, Ruth (2013) A simplified approach for calculating the moments of action for linear reaction-diffusion equations.

*Physical Review E (PRE)*. (In Press) 56

Ellery, Adam J., Simpson, Matthew J., & McCue, Scott W. (2013) Comment on "Local accumulation times for source, diffusion, and degradation models in two and three dimensions" [J. Chem. Phys. 138, 104121 (2013)].

*Journal of Chemical Physics*,*139*(017101), pp. 1-2. 27

2

2

Faddy, H.M., Seed, C.R., Faddy, M. J., Flower, R.L., & Harley, R.J. (2013) Malaria antibody persistence correlates with duration of exposure.

*Vox Sanguinis*,*104*(4), pp. 292-298.Farr, Anna Charisse, Kleinschmidt, Tristan, Johnson, Sandra, Yarlagadda, Prasad K.D.V., & Mengersen, Kerrie L. (2013) Investigating effective wayfinding in airports : a Bayesian network approach.

*Transport*. (In Press) 183

Flegg, Jennifer, Mallet, Daniel G., & Lupton, Mandy (2013) Students’ approaches to learning a new mathematical model.

*Teaching mathematics and it's applications*. 86

Greenwood, Ava A., Farrell, Troy W., & O'Hara, Ian M. (2013) Understanding mild acid pretreatment of sugarcane bagasse through particle scale modeling.

*Biotechnology and Bioengineering*. (In Press)Hall, Joanne L., Rao, Asha, & Gagola, Stephen M. (2013) A family of Alltop functions that are EA-inequivalent to the cubic function.

*IEEE Transactions on Communications*,*61*(11), pp. 4722-4727. 23

Han, Guo-Sheng, Yu, Zuguo, Anh, Vo, Krishnajith, Anaththa P.D., & Tian, Yu-Chu (2013) An ensemble method for predicting subnuclear localizations from primary protein structures.

*PLOS ONE*,*8*(2), e57225:1-e57225:14. 74

2

2

Harley, K., van Heijster, P., & Pettet, G.J. (2013) A geometric construction of travelling wave solutions to the Keller–Segel model. In

*EMAC 2013 : Engineering Mathematics and Applications Conference*, 1-4 December 2013, Brisbane, QLD. (Unpublished) 25

Hejazi, Hala, Moroney, Tim, & Liu, Fawang (2013) A comparison of finite difference and finite volume methods for solving the space-fractional advection-dispersion equation with variable coefficients.

*The ANZIAM Journal*,*54*, C557-C573. 15

Hejazi, Hala, Moroney, Timothy, & Liu, Fawang (2013) A finite volume method for solving the two-sided time-space fractional advection-dispersion equation.

*Central European Journal of Physics*,*11*(10), pp. 1275-1283.Huang, Xiaodong, Grace, Peter, Hu, Wenbiao, Rowlings, David, & Mengersen, Kerrie (2013) Spatial prediction of N2O emissions in pasture : a Bayesian model averaging analysis.

*PLoS ONE*,*8*(6), e65039.Huang, Xiaodong, Grace, Peter, Rowlings, David, & Mengersen, Kerrie (2013) A flexible Bayesian model for describing temporal variability of N2O emissions from an Australian pasture.

*Science of The Total Environment*,*454-455*, pp. 206-210. 1

1

Huang, Xiaodong (2013)

*Spatiotemporal modelling in estimation of nitrous oxide emissions from soil.*PhD by Publication, Queensland University of Technology. 123

Johnson, Sandra, Abal, Eva, Ahern, Kathleen, & Hamilton, Grant (2013) From science to management : using Bayesian networks to learn about Lyngbya.

*Statistical Science*. (In Press)Johnson, Sandra, Marker, Laurie, Mengersen, Kerrie, Gordon, Chris H., Melzheimer, Jörg, Schmidt-Küntzel, Anne, et al. (2013) Modeling the viability of the free-ranging cheetah population in Namibia : an object-oriented Bayesian network approach.

*Ecosphere*,*4*(7). 40

1

Johnston, Stuart, Simpson, Matthew, & Plank, Michael (2013) Lattice-free descriptions of collective motion with crowding and adhesion.

*Physical Review E (PRE)*,*88*(6), pp. 1-11.Keenan, Bethany E., Izatt, Maree T., Askin, Geoffrey N., Labrom, Robert D., Pettet, Graeme J., Pearcy, Mark J., et al. (2013) Segmental torso masses and coronal plane joint torques in the adolescent scoliotic spine. In Stanford, Ralph E. (Ed.)

*24th Annual Scientific Meeting of the Spine Society of Australia*, Spine Society of Australia, Pan Pacific Perth Hotel, Perth, Australia. 14

Keenan, Bethany E., Izatt, Maree T., Askin, Geoffrey N., Labrom, Robert D., Pettet, Graeme J., Pearcy, Mark J., et al. (2013) Segmental torso masses and gravity-induced coronal plane joint moments in adolescent idiopathic scoliosis. In Freeman, Brian J. (Ed.)

*Proceeding of the Adelaide Centre for Spine Research, Symposium XI*, Mt Lofty, Adelaide, SA. 123

Keenan, Bethany E., Izatt, Maree T., Askin, Geoffrey N., Pettet, Graeme J., Labrom, Robert D., Pearcy, Mark J., et al. (2013) Segmental torso masses and joint torques produced by gravity in the adolescent scoliotic spine. In Goh, James & Lim, ChweeTeck (Eds.)

*Proceedings of the 15th International Conference on Biomedical Engineering (ICBME 2013)*, IFMBE and Biomedical Engineering Society (Singapore), Singapore, p. 23. 13

Kelly, Mark D., Gibson, Abby, Bartlett, Harry, Rowling, Diane, & Patten, John (2013) Tenofovir-associated proteinuria.

*AIDS*,*27*(3), pp. 479-481. 3

3

3

La Marca, Antonio, Sighinolfi, Giovanna, Papaleo, Enrico, Cagnacci, Angelo, Volpe, Annibale, & Faddy, Malcolm J. (2013) Prediction of age at menopause from assessment of ovarian reserve may be improved by using body mass index and smoking status.

*PLoS ONE*,*8*(3), pp. 1-7. 2

1

Loessner, Daniela, Flegg, Jennifer Anne, Byrne, Helen M., Clements, Judith, & Hutmacher, Dietmar (2013) Growth of confined cancer spheroids : a combined experimental marker, critical modelling approach.

*Integrative Biology*,*5*(3), pp. 597-605. 13

3

3

Lottering, Nicolene, MacGregor, Donna M., Meredith, Matthew, Alston, Clair L., & Gregory, Laura Susan (2013) Evaluation of the Suchey-Brooks Method of age estimation in an Australian subpopulation using computed tomography of the pubic symphyseal surface.

*American Journal of Physical Anthropology*,*150*(3), pp. 386-399. 33

3

2

Low-Choy, Samantha (2013) Bayesian modelling of surveillance and proof of freedom : the mathematical, logical & psychological challenges. In Anderssen, Bob (Ed.)

*A Planet at Risk - Bioinvasion & Biosecurity Workshop*, 12-13 September 2013, CSIRO Discovery Centre, Canberra, Australia. (Unpublished) 16

Lustri, Christopher J., McCue, Scott W., & Chapman, S. Jonathan (2013) Exponential asymptotics of free surface flow due to a line source.

*IMA Journal of Applied Mathematics*,*78*(4), pp. 697-713. 1

Markham, Deborah C., Simpson, Matthew, Maini, Philip K., Gaffney, Eamonn, & Baker, Ruth (2013) Incorporating spatial correlations into multispecies mean-field models.

*Physical Review E*,*88*(5), 052713-1-052713-9. 13

Markham, Deborah C., Simpson, Matthew J, & Baker, Ruth E. (2013) Simplified method for including spatial correlations in mean-field approximations.

*Physical Review E (Statistical, Nonlinear, and Soft Matter Physics)*,*87*(6), pp. 1-10. 37

2

2

Mayo, Lisa C., McCue, Scott W., & Moroney, Timothy J. (2013) Gravity-driven fingering simulations for a thin liquid film flowing down the outside of a vertical cylinder.

*Physical Review E (Statistical, Nonlinear, and Soft Matter Physics)*,*87*(5), pp. 1-16. 69

Mayo, Lisa C., McCue, Scott W., & Moroney, Timothy J. (2013) Numerical solutions for thin film flow down the outside and inside of a vertical cylinder.

*The ANZIAM Journal*,*54*, C377-C393. 30

Milford, Michael, Turner, Ian, & Corke, Peter (2013) Long exposure localization in darkness using consumer cameras. In

*Proceedings of the 2013 IEEE International Conference on Robotics and Automation*, IEEE, Kongresszentrum Karlsruhe, Karlsruhe, Germany.Moores, Matthew T., Hargrave, Catriona Elizabeth, Harden, Fiona, & Mengersen, Kerrie (2013) Segmentation of cone-beam CT using a hidden Markov random field with informative priors. In

*ICCR 2013 International Conference on the Use of Computers in Radiation Therapy*, 6-9 May 2013, Melbourne Convention and Exhibition Centre, Australia. (Unpublished) 44

Moroney, Timothy J. & Yang, Qianqian (2013) Efficient solution of two-sided nonlinear space-fractional diffusion equations using fast Poisson preconditioners.

*Journal of Computational Physics*,*246*, pp. 304-317. 2

2

Moroney, Timothy J. & Yang, Qianqian (2013) A banded preconditioner for the two-sided, nonlinear space-fractional diffusion equation.

*Computers & Mathematics with Applications*. 92

2

3

Orumiehchiha, Mohammad Ali, Pieprzyk, Josef, Steinfeld, Ron, & Bartlett, Harry (2013) Security analysis of linearly filtered NLFSRs.

*Journal of Mathematical Cryptology*,*7*(4), pp. 313-332.Perre, P, Remond, R, & Turner, I (2013) A comprehensive dual-scale wood torrefaction model : application to the analysis of thermal run-away in industrial heat treatment processes.

*International Journal of Heat and Mass Transfer*,*64*, pp. 838-849. 1

1

Pitchforth, Jegar & Mengersen, Kerrie (2013) A proposed validation framework for expert elicited Bayesian Networks.

*Expert Systems with Applications*,*40*(1), pp. 162-167. 17

5

4

Plank, Michael & Simpson, Matthew (2013) Lattice-free models of cell invasion : discrete simulations and travelling waves.

*Bulletin of Mathematical Biology*. (In Press) 1

1

Ryan, Elizabeth G., Drovandi, Christopher C., & Pettitt, Anthony N. (2013)

*Fully Bayesian experimental design for pharmacokinetic studies.*[Working Paper] (Unpublished)Simpson, Matthew, Binder, Benjamin J., Haridas, Parvathi, Wood, Benjamin, Treloar, Katrina, McElwain, Sean, et al. (2013) Experimental and modelling investigation of monolayer development with clustering.

*Bulletin of Mathematical Biology*,*75*(5), pp. 871-889. 5

6

Simpson, Matthew, Ellery, Adam, McCue, Scott W., & Baker, Ruth (2013) Critical timescales and time intervals for coupled linear processes.

*ANZIAM Journal*,*54*(3), pp. 127-142. 50

3

3

Simpson, Matthew, Foy, Brody, & McCue, Scott W. (2013) Travelling waves for a velocity–jump model of cell migration and proliferation.

*Mathematical Biosciences*,*244*(2), pp. 98-106. 55

Simpson, Matthew, Jazaei, Farhad, & Clement, Prabhakar (2013) How long does it take for aquifer recharge or aquifer discharge processes to reach steady state?

*Journal of Hydrology*,*501*, pp. 241-248. 1

1

Simpson, Matthew J., Treloar, Katrina K., Binder, Benjamin J., Haridas, Parvathi, Manton, Kerry J., Leavesley, David I., et al. (2013) Quantifying the roles of cell motility and cell proliferation in a circular barrier assay.

*Journal of the Royal Society. Interface*,*10*(82). 15

10

8

Smith, Ian Robert (2013)

*Development and use of risk adjusted statistical process control tools for the monitoring and improvement of clinical outcomes in interventional cardiology.*PhD by Publication, Queensland University of Technology. 60

South, Leah & Stebila, Douglas (2013) Count-min sketches for estimating password frequency within Hamming distance two.

*Lecture Notes in Computer Science [Information Security and Privacy: 18th Australasian Conference, ACISP 2013, Brisbane, Australia, July 1-3, 2013 Proceedings]*,*7959*, pp. 388-402.Teo, Sui-Guan, Bartlett, Harry, Alhamdan, Ali, Simpson, Leonie, Wong, Kenneth Koon-Ho, & Dawson, Edward (2013)

*State convergence in bit-based stream ciphers.*[Working Paper] (Submitted (not yet accepted for publication)) 34

Teo, Sui-Guan, Wong, Kenneth Koon-Ho, Bartlett, Harry, Simpson, Leonie, & Dawson, Edward (2013)

*Algebraic analysis of Trivium-like ciphers.*[Working Paper] (Unpublished) 92

Thamrin, Sri Astuti, McGree, James Matthew, & Mengersen, Kerrie L. (2013) Modelling survival data to account for model uncertainty: a single model or model averaging?

*SpringerPlus*,*2*(665), pp. 1-13. 14

Thamrin, Sri Astuti (2013)

*Bayesian survival analysis using gene expression.*PhD by Publication, Queensland University of Technology. 144

Treloar, Katrina & Simpson, Matthew (2013) Sensitivity of edge detection methods for quantifying cell migration assays.

*PLOS ONE*,*8*(6). 83

4

5

Treloar, Katrina, Simpson, Matthew, Haridas, Parvathi, Manton, Kerry, Leavesley, David I., McElwain, Sean, et al. (2013) Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies.

*BMC Systems Biology*. (In Press) 7

Treloar, Katrina, Simpson, Matthew, & McCue, Scott W. (2013) Velocity jump processes with proliferation.

*Journal of Physics A : Mathematical and General*,*46*(1), pp. 1-17. 46

1

1

Trisilowati, (2013)

*Mathematical modelling of tumour growth and interaction with host tissue and the immune system.*PhD thesis, Queensland University of Technology. 155

Trisilowati,, McCue, Scott W., & Mallet, Daniel G. (2013) Numerical solution of an optimal control model of dendritic cell treatment of a growing tumour.

*ANZIAM Journal*,*54*, C664-C680. 65

Vezzoli, Massimiliano, Farrell, Troy, Baker, Adrian, Psaltis, Steven, Martens, Wayde N., & Bell, John M. (2013) Optimal catalyst thickness in titanium dioxide fixed film reactors: Mathematical modelling and experimental validation.

*Chemical Engineering Journal*,*234*, pp. 57-65.Warne, David, Young, Joseph A., & Kelson, Neil A. (2013) Visualisation of complex flows using texture-based techniques.

*ANZIAM Journal*,*54*.Warne, David J., Hayward, Ross F., Kelson, Neil A., & Mallet, Dann G. (2013) An efficient algorithm for the detection of Eden.

*Complex Systems*,*22*(4), pp. 377-404. (In Press)Waterhouse, Mary & Johnson, Sandra (2013) Tangled Webs : Using Bayesian Networks in the Fight Against Infection. In Alston, Clair L., Mengersen, Kerrie L., & Pettitt, Anthony N. (Eds.)

*Case Studies in Bayesian Statistical Modelling and Analysis.*John Wiley & Sons, Chichester, West Sussex, England, pp. 348-360.White, Gentry (2013) A discussion of “Estimating the historical and future probabilities of large terrorist events'' by Aaron Clauset and Ryan Woodard.

*The Annals of Applied Statistics*,*7*(4), pp. 1876-1880. 4

White, Gentry & Porter, Michael D. (2013) GPU accelerated MCMC for modelling terrorist activity.

*Computational Statistics and Data Analysis*,*71*, pp. 643-651. 1

1

White, Nicole & Mengersen, Kerrie (2013)

*Spatial modelling of population health screening : the role of accessibility in predicting expected patient flows.*[Working Paper] (Unpublished) 77

Wu, Paul P., Pitchforth, Jegar, & Mengersen, Kerrie (2013)

*A Hybrid Queue-based Bayesian Network Framework for passenger facilitation modelling.*(Unpublished)Yu, Qiang (2013)

*Numerical simulation of anomalous diffusion with application to medical imaging.*PhD by Publication, Queensland University of Technology. 146

## 2014

Agnew, D.J.G., Green, J.E.F., Brown, T.M., Simpson, M.J., & Binder, B.J. (2014) Distinguishing between mechanisms of cell aggregation using pair-correlation functions.

*Journal of Theoretical Biology*. (In Press)Al Hamdan, Ali, Bartlett, Harry, Dawson, Ed, Simpson, Leonie, & Wong, Kenneth Koon-Ho (2014) Weak key-IV pairs in the A5/1 stream cipher. In Parampalli, Udaya & Welch, Ian (Eds.)

*Proceedings of the Twelfth Australasian Information Security Conference (AISC 2014) [Conferences in Research and Practice in Information Technology, Volume 149]*, Australian Computer Society, Inc., Auckland, New Zealand, pp. 23-36. 14

Antrobus, Emma, Elffers, Henk, White, Gentry, & Mazerolle, Lorraine (2014) Non-response bias in randomized control experiments in criminology : putting the Queensland Community Engagement Trial (QCET) under a microscope.

*Evaluation Review*. (In Press)Back, Julian M., McCue, Scott W., Hsieh, Mike Hou-Ning, & Moroney, Timothy J. (2014) The effect of surface tension and kinetic undercooling on a radially-symmetric melting problem.

*Applied Mathematics and Computation*,*229*, pp. 41-52.Burdett, Robert, Kozan, Erhan, & Kenley, R. (2014) Block models for improved earthwork allocation planning in linear infrastructure construction.

*Engineering Optimization*. (In Press)Burdett, Robert L. & Kozan, Erhan (2014) Determining operations affected by delay in predictive train timetables.

*Computers and Operations Research*,*41*, pp. 150-166.Buys, Laurie, Mengersen, Kerrie, Johnson, Sandra, van Buuren, Neil, & Chauvin, Anita (2014) Creating a Sustainability Scorecard as a predictive tool for measuring the complex social, economic and environmental impacts of industries, a case study : assessing the viability and sustainability of the dairy industry.

*Journal of Environmental Management*,*133*, pp. 184-192.Caley, M. Julian, O'Leary, Rebecca A., Fisher, Rebecca, Low-Choy, Samantha, Johnson, Sandra, & Mengersen, Kerrie (2014) What is an expert? A systems perspective on expertise.

*Ecology and Evolution*,*4*(3), pp. 231-242.De Antoni Migliorati, Massimiliano, Scheer, Clemens, Grace, Peter, Rowlings, David, Bell, Mike, & McGree, James (2014) Influence of different nitrogen rates and DMPP nitrification inhibitor on annual N2O emissions from a subtropical wheat–maize cropping system.

*Agriculture, Ecosystems & Environment*,*186*(15), pp. 33-43.Drovandi, Christopher C. (2014)

*Pseudo-marginal algorithms with multiple CPUs.*[Working Paper] (Unpublished) 57

Drovandi, Christopher C., McGree, James, & Pettitt, Anthony N. (2014) A sequential Monte Carlo algorithm to incorporate model uncertainty in Bayesian sequential design.

*Journal of Computational and Graphical Statistics*,*23*(1), pp. 3-24. 118

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Drovandi, Christopher C., Pettitt, Anthony N., Henderson, Robert D., & McCombe, Pamela A. (2014) Marginal reversible jump Markov chain Monte Carlo with application to motor unit number estimation.

*Computational Statistics & Data Analysis*,*72*, pp. 128-146.Ellery, Adam, Simpson, Matthew, McCue, Scott W., & Baker, Ruth (2014) Characterizing transport through a crowded environment with different obstacle sizes.

*Journal of Chemical Physics*,*140*(5), 054108. 5

Falk, Matthew G., McGree, James, & Pettitt, Anthony N. (2014) Sampling designs on stream networks using the pseudo-Bayesian approach.

*Environmental and Ecological Statistics*. (In Press)Hanafi, Rosmalina & Kozan, Erhan (2014) A hybrid constructive heuristic and simulated annealing for railway crew scheduling.

*Computers & Industrial Engineering*. (In Press)Harden, Fiona, Davis, Gabrielle, & Mengersen, Kerrie (2014) The tertiary debate : a case study analysis of factors considered when applying for university entry by traditional age school leavers in Brisbane.

*Australian Universities' Review*,*56*(1), pp. 39-46.Hargrave, Catriona Elizabeth, Moores, Matthew T., Deegan, Timothy, Gibbs, Adrian, Poulsen, Michael, Harden, Fiona, et al. (2014) Constructing a clinical decision-making framework for image-guided radiotherapy using a Bayesian Network.

*Journal of Physics : Conference Series*,*489*(1), 012074 . 5

Harley, K., van Heijster, P., Marangell, R., Pettet, G.J., & Wechselberger, M. (2014) Existence of travelling wave solutions for a model of tumour invasion.

*SIAM Journal Applied Dynamical Systems*,*13*(1), pp. 366-396. 16

Hejazi, Hala, Moroney, Timothy J., & Liu, Fawang (2014) Stability and convergence of a finite volume method for the space fractional advection-dispersion equation.

*Journal of Computational and Applied Mathematics*,*255*, pp. 684-697. 2

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Liu, Qingxia, Liu, Fawang, Turner, Ian, Anh, Vo, & Gu, YuanTong (2014) A RBF meshless approach for modeling a fractal mobile/immobile transport model.

*Applied Mathematics and Computation*,*226*, pp. 336-347.Markham, Deborah C., Simpson, Matthew, Maini, Philip K., Gaffney, Eamonn, & Baker, Ruth (2014) Comparing methods for modelling spreading cell fronts.

*Journal of Theoretical Biology*. (In Press)Mazerolle, Lorraine, Bates, Lyndel, Bennett, Sarah, White, Gentry, & Antrobus, Emma (2014) Optimising the length of Random Breath Tests : results from the Queensland Community Engagement Trial.

*Australian and New Zealand Journal of Criminology*. (In Press)Moores, Matthew T., Hargrave, Catriona Elizabeth, Harden, Fiona, & Mengersen, Kerrie (2014) Segmentation of cone-beam CT using a hidden Markov random field with informative priors.

*Journal of Physics : Conference Series*,*489*. 41

Pasdunkorale Arachchige, Jayantha & Pettet, Graeme J. (2014) A finite volume method with linearisation in time for the solution of advection-reaction-diffusion systems.

*Applied Mathematics and Computation*,*231*, pp. 445-462.Pethiyagoda, Ravindra, McCue, Scott W., Moroney, Timothy J., & Back, Julian M. (2014) Jacobian-free Newton-Krylov methods with GPU acceleration for computing nonlinear ship wave patterns.

*Journal of Computational Physics*. (In Press)Ryan, Elizabeth, Drovandi, Christopher C., Thompson, Helen, & Pettitt, Anthony N. (2014) Towards Bayesian experimental design for nonlinear models that require a large number of sampling times.

*Computational Statistics and Data Analysis*,*70*, pp. 45-60.Simpson, Matthew & Ellery, Adam (2014) Exact series solutions of reactive transport models with general initial conditions.

*Journal of Hydrology*. (In Press)Simpson, Matthew, Haridas, Parvathi, & McElwain, Sean (2014) Do pioneer cells exist?

*PLOS ONE*,*9*(1), e85488. 13

Simpson, Matthew, Sharp, Jesse, & Baker, Ruth (2014) Distinguishing between mean-field, moment dynamics and stochastic descriptions of birth-death-movement processes.

*Physica A Statistical Mechanics and its Applications*. (In Press) 1

Strickland, Christopher Mark, Burdett, Robert L., Denham, Robert, & Mengersen, Kerrie L. (2014) PySSM : a Python module for Bayesian inference of linear Gaussian state space models.

*Journal of Statistical Software*,*57*(6). 347

Symonds, Michael, Bruza, Peter D., Zuccon, Guido, Koopman, Bevan, Sitbon, Laurianne, & Turner, Ian (2014) Automatic query expansion : a structural linguistic perspective.

*Journal of the American Society for Information Science and Technology*.Teo, Sui-Guan, Wong, Kenneth Koon-Ho, Bartlett, Harry, Simpson, Leonie, & Dawson, Ed (2014) Algebraic analysis of Trivium-like ciphers. In Parampali, Udaya & Welch, Ian (Eds.)

*Proceedings of the Twelfth Australasian Information Security Conference (AISC 2014) [Conferences in Research and Practice in Information Technology, Volume 149]*, Australian Computer Society, Auckland, New Zealand, pp. 77-81. 7

White, Gentry, Mazerolle, Lorraine, Chalk, Peter, & Porter, Michael D. (2014) Modeling the effectiveness of counterterrorism interventions.

*Trends and Issues in Crime and Criminal Justice*. (In Press)Young, Heather, Bergner, Annette, Simpson, Matthew, McKeown, Sonja, Anderson, Colin, & Enomoto, Hideki (2014) Colonizing while migrating : how do individual enteric neural crest cells behave?

*BMC Biology*,*12*(23). 2

van Heijster, Peter & Sandstede, Björn (2014) Bifurcations to travelling planar spots in a three-component FitzHugh-Nagumo system.

*Physica D : Nonlinear Phenomena*,*275*, pp. 19-34.