Browse By Person: An, Jiyuan
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Number of items: 14.
An, Jiyuan, Chen, Hanxiong, Furuse, Kazutaka, & Ohbo, Nobuo (2005) CVA File: An Index Structure for High-Dimensional Datasets. Knowledge and Information Systems, 7(3), pp. 337-357.
An, Jiyuan, Lai, John, Lehman, Melanie, & Nelson, Colleen (2012) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acid Research, 41(2), pp. 727-737.
An, Jiyuan, Liew, Alan Wee-Chung, & Nelson, Colleen (2012) Seed-based biclustering of gene expression data. PLoS ONE, 7(8).
Sieh, Shirly, Taubenberger, Anna V., Rizzi, Simone C., Sadowski, Martin, Lehman, Melanie, Rockstroh, Anja, et al. (2012) Phenotypic Characterization of Prostate Cancer LNCaP Cells Cultured within a Bioengineered Microenvironment. PLoS ONE, 7(9), e40217.
Lai, John, An, Jiyuan, Nelson, Colleen C., Lehman, Melanie L., Batra, Jyotsna, & Clements, Judith A. (2014) Analysis of androgen and anti-androgen regulation of KLK-related peptidase 2, 3, and 4 alternative transcripts in prostate cancer. Biological Chemistry, 395(9), pp. 1127-1132.
An, Jiyuan, Lai, John, Sajjanhar, Atul, Lehman, Melanie L., & Nelson, Colleen C. (2014) miRPlant : an integrated tool for identification of plant miRNA from RNA sequencing data. BMC Bioinformatics, 15(1), p. 275.
Lai, John, An, Jiyuan, Seim, Inge, Walpole, Carina, Hoffman, Andrea, Moya, Leire, et al. (2015) Fusion transcript loci share many genomic features with non-fusion loci. BMC Genomics, 16(1021).
An, Jiyuan, Lai, John, Wood, David L A, Sajjanhar, Atul, Wang, Chenwei, Tevz, Gregor, et al. (2015) RNASeqBrowser: A genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks. BMC Genomics, 16, p. 145.
An, Jiyuan, Lai, John, Sajjanhar, Atul, Batra, Jyotsna, Wang, Chenwei, & Nelson, Colleen C. (2015) J-Circos : an interactive Circos plotter. Bioinformatics, 31(9), pp. 1463-1465.
An, Jiyuan, Lai, John, Wang, Chenwei, Tevz, Gregor, Lehman, Melanie L., & Nelson, Colleen C. (2015) Visualization of next generation sequencing data. In 2nd Prostate Cancer World Congress, 17-21 August 2015, Cairns Convention Centre, Cairns, Qld.
An, Jiyuan, Lai, John, Zeng, Lingzao, & Nelson, Colleen (2016) Analysis of differential gene expression based on Bayesian estimation of variance. Current Bioinformatics, 11(2), pp. 164-168.
Tang, Kai Dun, Liu, Ji, Jovanovic, Lidija, An, Jiyuan, Hill, Michelle M., Vela, Ian, et al. (2016) Adipocytes promote prostate cancer stem cell self-renewal through amplification of the cholecystokinin autocrine loop. Oncotarget, 7(4), pp. 4939-4948.
Tevz, Gregor, McGrath, Sean, Demeter, Ryan, Magrini, Vincent, Jeet, Varinder, Rockstroh, Anja, et al. (2016) Identification of a novel fusion transcript between human relaxin-1 (RLN1) and human relaxin-2 (RLN2) in prostate cancer. Molecular and Cellular Endocrinology, 420, pp. 159-168.
Lai, John, An, Jiyuan, Srinivasan, Srilakshmi, Clements, Judith A., & Batra, Jyotsna (2016) A computational analysis of the genetic and transcript diversity at the kallikrein locus. Biological Chemistry. (In Press)