Browse By Person: Phillips, Matthew
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Number of items: 34.
Book Chapter
Phillips, Matthew J. & Penny, David (2010) Mammalian phylogeny. In Encyclopedia of Life Sciences. John Wiley & Sons, London ; New York.
Journal Article
Phillips, Matthew J., Haouchar, Dalal, Pratt, Ranae C., Gibb, Gillian, & Bunce, Michael (2013) Inferring kangaroo phylogeny from incongruent nuclear and mitochondrial genes. PLoS ONE, 8(2), pp. 1-12.
White, Nicole E., Phillips, Matthew J., Gilbert, M. Thomas P., Alfaro-Núñez, Alonzo, Willerslev, Eske, Mawson, Peter R., et al. (2011) The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae). Molecular Phylogenetics and Evolution, 59(3), pp. 615-622.
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6 6Ho, S. Y. W., Lanfear, R., Phillips, Matthew J., Barnes, I., Thomas, J. A., Kolokotronis, S.-O., et al. (2011) Bayesian estimation of substitution rates from ancient DNA sequences with low information content. Systematic Biology, 60(3), pp. 366-375.
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16 16Ksepka, Daniel T., Benton, Michael J., Carrano, Matthew T., Gandolfo, Maria A., Head, Jason J., Hermsen, Elizabeth J., et al. (2011) Synthesizing and databasing fossil calibrations: divergence dating and beyond. Biology Letters, 7(6), pp. 801-803.
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2 1Ho, Simon Y. W., Lanfear, Robert, Bromham, Lindell, Phillips, Matthew J., Soubrier, Julien, Rodrigo, Allen G., et al. (2011) Time-dependent rates of molecular evolution. Molecular Ecology, 20(15), pp. 3087-3101.
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36 37Robins, Judith H., McLenachan, Patricia A., Phillips, Matthew J., McComish, Bennet J., Matisoo-Smith, Elizabeth, & Ross, Howard A. (2010) Evolutionary relationships and divergence times among the native rats of Australia. BMC Evolutionary Biology, 10(375), pp. 1-16.
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6 5Bunce, M., Worthy, T. H., Phillips, Matthew J., Holdaway, R. N., Willerslev, E., Haile, J., et al. (2009) The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography. Proceedings of the National Academy of Sciences, 106(49), pp. 20646-20651.
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42 38Ho, Simon Y. W. & Phillips, Matthew J. (2009) Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Systematic Biology, 58(3), pp. 367-380.
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155 150Phillips, Matthew J. (2009) Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny. Gene, 441(1-2), pp. 132-140.
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24 24Phillips, Matthew J. (2009) Mammalian and avian survival across the Cretaceous-Tertiary boundary. New Zealand Science Review, 66(1), pp. 34-38.
Phillips, M.J., Gibb, G.C., Crimp, E.A., & Penny, D. (2009) Tinamous and moa flock together : mitochondrial genome sequence analysis reveals independent losses of flight among ratites. Systematic Biology, 59(1), pp. 90-107.
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35 33Morgan-Richards, Mary, Trewick, Steve A, Bartosch-Harlid, Anna, Kardialsky, Olga, Phillips, Matthew J., McLenachan, Patricia A, et al. (2008) Bird evolution: testing the metaves clade with six new mitochondrial genomes. BMC Evolutionary Biology, 8(1), p. 20.
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31 25Robins, Judith H., McLenachan, Patricia A., Phillips, Matthew J., Craig, Lauren, Ross, Howard A., & Matisoo-Smith, Elizabeth (2008) Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes. Molecular Phylogenetics and Evolution, 49(2), pp. 460-466.
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26 26Phillips, Matthew J. & Pratt, Renae C. (2008) Family-level relationships among the Australasian marsupial “herbivores” (Diprotodontia: Koala, wombats, kangaroos and possums). Molecular Phylogenetics and Evolution, 46(2), pp. 594-605.
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14 14Gibbs, Adrian J., Ohshima, Kzusato, Phillips, Matthew J., & Gibbs, Mark J. (2008) The Prehistory of Potyviruses: Their Initial Radiation Was during the Dawn of Agriculture. PLoS ONE, 3(6), e2523-e2523.
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42 45Pratt, R.C., Gibb, G.C., Morgan-Richards, M., Phillips, M.J., Hendy, M.D., & Penny, D. (2008) Toward resolving deep neoaves phylogeny : data, signal enhancement, and priors. Molecular Biology and Evolution, 26(2), pp. 313-326.
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34 31Ho, Simon Y.W., Shapiro, Beth, Phillips, Matthew J., Cooper, Alan, & Drummond, Alexei J. (2007) Evidence for time dependency of molecular rate estimates. Systematic Biology, 56(3), pp. 515-522.
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115 114Penny, David & Phillips, Matthew J. (2007) Evolutionary biology : mass survivals. Nature, 446(7135), pp. 501-502.
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2 2Phillips, Matthew J., McLenachan, Patricia, Down, Christin, Gibb, Gillian, & Penny, David (2006) Combined mitochondrial and nuclear DNA sequences resolve the interrelations of the major Australasian marsupial radiations. Systematic Biology, 55(1), pp. 122-137.
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49 49Drummond, Alexei J., Ho, Simon Y. W., Phillips, Matthew J., & Rambaut, Andrew (2006) Relaxed phylogenetics and dating with confidence. PLoS Biology, 4(5), e88-e88.
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853 1,045Ho, S. Y. W., Phillips, Matthew J., Cooper, Alan, & Drummond, Alexei (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution, 22(7), pp. 1561-1568.
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427 424Hebsgaard, Martin B., Phillips, Matthew J., & Willerslev, Eske (2005) Geologically ancient DNA: fact or artefact? Trends in Microbiology, 13(5), pp. 212-220.
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52 48Ho, Simon Y.W., Phillips, Matthew, Drummond, Alexei, & Cooper, Alan (2005) Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation. Molecular Biology and Evolution, 22(5), pp. 1355-1363.
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67 66Barnett, Ross, Barnes, Ian, Phillips, Matthew J., Martin, Larry D., Harington, C. Richard, Leonard, Jennifer A., et al. (2005) Evolution of the extinct Sabretooths and the American cheetah-like cat. Current Biology, 15(15), R589-R590.
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29 26Harrison, G.L., McLenachan, Patricia A., Phillips, Matthew J., Slack, Kerryn E., Cooper, Alan, & Penny, David (2004) Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Molecular Biology and Evolution, 21(6), pp. 974-983.
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74 71Phillips, Matthew J., Delsuc, Frederic, & Penny, David (2004) Genome-scale phylogeny and the detection of systematic biases. Molecular Biology and Evolution, 21(7), pp. 1455-1458.
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186 186Jeffares, Daniel C., Phillips, Matthew J., Moore, Stanley, & Veit, Bruce (2004) A description of the Mei2-like protein family; structure, phylogenetic distribution and biological context. Development Genes and Evolution, 214(3), pp. 149-158.
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13 13Penny, David & Phillips, Matthew J. (2004) The rise of birds and mammals: are microevolutionary processes sufficient for macroevolution? Trends in Ecology and Evolution, 19(10), pp. 516-522.
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32 31Conference Item
Cooper, Alan, Kamp, Peter, Bunce, Mike, Phillips, Matthew J., & Worthy, Trevor (2009) A new geological model of Cenozoic New Zealand suggests a complex phylogeographic history for New Zealand terrestrial taxa. In Geology and Genes Meeting IV, 2009, Christchurch.
Penny, David & Phillips, Matthew J. (2006) 'Nothing exists for one cause' : putting biology back into evolution. In Geology amd Genes III Conference, 2006, Wellington.
Review
Phillips, M.J., Bennett, T.H., & Lee, M.S.Y. (2010) Reply to Camens : how recently did modern monotremes diversify? Proceedings of the National Academy of Sciences, 107(4), E13-E13.
Phillips, Matthew J. (2006) Sympathy for the devil [Book reviewed : "Tasmanian Devil: A Unique and Threatened Animal" by David Owen and David Pemberton]. Nature, 440(7088), p. 1115.
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1Phillips, Matthew (2005) Review ["Telling the Evolutionary Time : Molecular Clocks and the Fossil Record" edited by Philip C. J. Donoghue and M. Paul Smith]. Systematic Biology, 54(1), pp. 174-176.