# Browse By Person: Yu, Zu-Guo

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**72**.## Book Chapter

Yu, Zu-Guo, Han, Guo-Sheng, Li, Bo, Anh, Vo, & Li, Yi-Quan
(2011)
Chaos game representation of mitochondrial genomes : Markov chain model simulation and vertebrate phylogeny.
In
Liu, L, Wei, D, & Li, Y (Eds.)

*Interdisciplinary Research and Applications in Bioinformatics, Computational Biology, and Environmental Sciences.*IGI Global, United States of America, pp. 28-38.

Anh, Vo, Chen, Yi-Ping, & Yu, Zu-Guo
(2005)
Visualization and Fractal Analysis of Biological Sequences.
In
Chen, Y (Ed.)

*Bioinformatics Technologies.*Springer-Verlag, Germany, pp. 313-351.## Journal Article

Zhou, Yuan-Wu, Liu, Jin-Long, Yu, Zuguo, Zhao, Zhi-Qin, & Anh, Vo
(2014)
Fractal and complex network analyses of protein molecular dynamics.

*Physica A: Statistical Mechanics and its Applications*,*416*, pp. 21-32.
4

1

Yu, Zuguo, Leung, Yee, Chen, Yongqin, Zhang, Qiang, Anh, Vo, & Zhou, Yu
(2014)
Multifractal analyses of daily rainfall time series in Pearl River basin of China.

*Physica A: Statistical Mechanics and its Applications*,*405*, pp. 193-202.
5

6

Chen, Xiao-Su, Yu, Zuguo, & Zheng, Juan
(2014)
Dissimilarities in alignment-free methods for phylogenetic analysis based on genomes.

*Current Bioinformatics*,*9*(3), pp. 218-227.

Li, Bao-Gen, Yu, Zu-Guo, & Zhou, Yu
(2014)
Fractal and multifractal properties of a family of fractal networks.

*Journal of Statistical Mechanics: Theory and Experiment*,*2014*, pp. 1-11.
6

6

Han, Guo-Sheng, Yu, Zu-Guo, & Anh, Vo
(2014)
Secondary structure element alignment kernel method for prediction of protein structural classes.

*Current Bioinformatics*,*9*(3), pp. 253-257.

Liu, Jin-Long, Yu, Zu-Guo, & Anh, Vo
(2014)
Topological properties and fractal analysis of a recurrence network constructed from fractional Brownian motions.

*Physical Review E*,*89*(3), 032814-1.
6

6

Yu, Zu-Guo, Anh, Vo, & Eastes, Richard
(2014)
Underlying scaling relationships between solar activity and geomagnetic activity revealed by multifractal analyses.

*Journal of Geophysical Research: Space Physics*,*119*(9), pp. 7577-7586.
1

Fan, Long, Hui, Jerome, Yu, Zuguo, & Chu, Ka-Hou
(2014)
VIP Barcoding: Composition vector-based software for rapid species identification based on DNA barcoding.

*Molecular Ecology Resources*,*14*(4), pp. 871-881.
1

Shi, Long, Yu, Zu-Guo, Mao, Zhi, & Xiao, Aiguo
(2014)
A directed continuous time random walk model with jump length depending on waiting time.

*The Scientific World Journal*,*2014*(182508), pp. 1-4.
17

Shi, Long, Yu, Zuguo, Huang, Hai-Lan, Mao, Zhi, & Xiao, Aiguo
(2014)
The subordinated processes controlled by a family of subordinators and corresponding Fokker-Planck type equations.

*Journal of Statistical Mechanics: Theory and Experiment*,*2014*(Dec), pp. 1-12.

Han, Guo-Sheng, Yu, ZuGuo, & Anh, Vo
(2014)
A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC.

*Journal of Theoretical Biology*,*344*, pp. 31-39.
14

13

Han, Guo-Sheng, Yu, Zu-Guo, Anh, Vo, Krishnajith, Anaththa P.D., & Tian, Yu-Chu
(2013)
An ensemble method for predicting subnuclear localizations from primary protein structures.

*PLOS ONE*,*8*(2), e57225:1-e57225:14.
135

12

10

Wang, Yanfei, Yu, Zu-Guo, & Anh, Vo
(2013)
Fuzzy C-means method with empirical mode decomposition for clustering microarray data.

*International Journal of Data Mining and Bioinformatics*,*7*(2), pp. 103-117.
7

6

Zhou, Yu, Yee, Leung, & Yu, Zu-Guo
(2013)
Relationships of exponents in two-dimensional fractal detrended fluctuation analysis.

*Physical Review E (Statistical, Nonlinear, and Soft Matter Physics)*,*87*(1), pp. 1-4.
4

4

Li, Chi Pang, Yu, Zu-Guo, Han, Guo-Sheng, & Chu, Ka-Hou
(2012)
Analyzing -locus plant barcoding datasets with a composition vector method based on adjustable weighted distance.

*PLoS ONE*,*7*(7), pp. 1-7.
6

5

Wang, Danling, Yu, Zu-Guo, & Anh, Vo
(2012)
Fractal analysis of complex networks.

*Chinese Physics B*,*21*(8), pp. 1-12.
9

13

Yu, Zu-Guo, Anh, Vo, Eastes, Richard, & Wang, Danling
(2012)
Fractal analysis of solar flare indices and their horizontal visibility graphs.

*Nonlinear Processes in Geophysics*,*19*(6), pp. 657-665.
6

5

Han, Guo-Sheng, Yu, Zu-Guo, & Anh, Vo
(2011)
Predicting the subcellular location of apoptosis proteins based on recurrence quantification analysis and the Hilbert - Huang transform.

*Chinese Physics B*,*20*(10), pp. 1-10.
5

3

Zhu, Shaoming, Yu, Zu-Guo, & Anh, Vo
(2011)
Protein structural classification and family identification by multifractal analysis and wavelet spectrum.

*Chinese Physics B*,*20*(1), pp. 1-15.
6

8

Zhou, Yu, Yee, Leung, & Yu, Zu-Guo
(2011)
Relationships of exponents in multifractal detrended fluctuation analysis and conventional multifractal analysis.

*Chinese Physics B*,*20*(9), pp. 1-9.
3

7

Wang, Yanfei & Yu, Zu-Guo
(2011)
A type-2 fuzzy method for identification of disease-related genes on microarrays.

*International Journal of Bioscience, Biochemistry and Bioinformatics (IJBBB)*,*1*(1), pp. 73-78.

Yu, Zu-Guo, Xiao, Qian-Jun, Shi, Long, Jun-Wu, Yu, & Anh, Vo
(2010)
Chaos game representation of functional protein sequences, and simulation and multifractal analysis of induced measures.

*Chinese Physics B*,*19*(6), 068701-1.
6

9

Yu, Zu-Guo, Anh, Vo, Wang, Yang, Mao, Dong, & Wanliss, James
(2010)
Modeling and simulation of the horizontal component of the geomagnetic field by fractional stochastic differential equations in conjunction with empirical mode decomposition.

*Journal of Geophysical Research A: Space Physics*,*115*(Octobe), pp. 1-11.
16

15

Zhang, Qiang, Yu, Zu-Guo, Xu, Chong-Yu, & Anh, Vo
(2010)
Multifractal analysis of measure representation of flood/drought grade series in the Yangtze Delta, China, during the past millennium and their fractal model simulation.

*International Journal of Climatology*,*30*(3), pp. 450-457.
7

7

Yu, Zu-Guo, Zhan, Xiao-Wen, Han, Guo-Sheng, Wang, Roger, Anh, Vo, & Chu, Ka-Hou
(2010)
Proper Distance Metrics for Phylogenetic Analysis Using Complete Genomes without Sequence Alignment.

*International Journal of Molecular Sciences*,*11*(3), pp. 1141-1154.
18

14

Zhao, Zhi-Qin, Yu, Zu-Guo, & Anh, Vo
(2010)
Topological properties and fractal dimension of the Sierpinski and generalized Sierpinski networks.

*Communications in Fractional Calculus*,*1*(1), pp. 15-26.

Yu, Zu-Guo, Chu, Ka-Hou, Li, Chi Pang, Anh, Vo, Zhou, Li-Qian, & Wang, Roger
(2010)
Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model.

*BMC Evolutionary Biology*,*10*(192), pp. 1-11.
16

13

Yang, Jian-Yi, Yu, Zu-Guo, & Anh, Vo
(2009)
Clustering structures of large proteins using multifractal analyses based on a 6-letter model and hydrophobicity scale of amino acids.

*Chaos, Solitons and Fractals*,*40*(2), pp. 607-620.
17

15

Yu, Zu-Guo, Anh, Vo, & Eastes, Richard
(2009)
Multifractal analysis of geomagnetic storm and solar flare indices and their class dependence.

*Journal of Geophysical Research*,*114*(A05214), pp. 1-13.
13

17

Zhang, Qiang, Xu, Chong-Yu, Yu, Zu-Guo, Liu, Chun-Ling, & Chen, Yongqin
(2009)
Multifractal analysis of streamflow records of the East River Basin (Pearl River), China.

*Physica A: Statistical Mechanics and its Applications*,*388*(6), pp. 927-934.
31

28

Yang, Jian-Yi, Peng, Zhen-Ling, Yu, Zu-Guo, Zhang, Rui-Jie, Anh, Vo, & Wang, Desheng
(2009)
Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation.

*Journal of Theoretical Biology*,*257*(4), pp. 618-626.
78

71

Yu, Zu-Guo, Shi, Long, Xiao, QianJun, & Anh, Vo V.
(2008)
Simulation for chaos game representation of genomes
by recurrent iterated function systems.

*Journal of Biomedical Science and Engineering*,*1*(1), pp. 44-51.
97

1

Anh, Vo, Yang, Jian-Yi, Yu, Zu-Guo, Zhou, Li-Qian, & Zhou, Yu
(2008)
Human Pol ll promoter recognition based on primary sequences and free energy of dinucleotides.

*BMC Informatics*,*9*(113), pp. 1-13.
49

15

7

Zhou, Yu, Yu, Zu-Guo, & Anh, Vo V.
(2007)
Cluster protein structures using recurrence quantification analysis on coordinates of alpha-carbon atoms of proteins.

*Physics Letters. Section A: General, Atomic and Solid State Physics*,*368*(3/4), pp. 314-319.
182

8

8

Yang, Jian-Yi, Yu, Zu-Guo, & Anh, Vo
(2007)
Correlations between designability and various structural characteristics of protein lattice models.

*Journal of Chemical Physics*,*126*(19), pp. 1-12.
3

3

Tian, Yu-Chu, Yu, Zu-Guo, & Fidge, Colin J.
(2007)
Multifractal nature of network induced time delay in networked control systems.

*Physics Letters. Section A: General, Atomic and Solid State Physics*,*361*(1-2), pp. 103-107.
262

40

29

Anh, Vo V., Yu, Zu-Guo, & Wanliss, James A.
(2007)
Analysis of global geomagnetic variability.

*Nonlinear Processes in Geophysics*,*14*(6), pp. 701-708.
100

15

15

Anh, Vo, Wanliss, James, Watson, Stephen, & Yu, Zu-Guo
(2006)
Chaos Game Representation of The Dst Index and Prediction of Geomagnetic Storm Events.

*Chaos, Solitons & Fractals*,*31*(3), pp. 736-746.
87

17

13

Anh, Vo, Lau, Ka-Sing, Yu, Zu-Guo, & Zhou, Li-Qian
(2006)
Clustering of Protein Structures Using Hydrophobic Free Energy And Solvent Accessibility of Proteins.

*Physical Review E: Statistical, Nonlinear and Soft Matter Physics*,*73*(031920), pp. 1-14.
43

34

24

Yu, Zu-Guo, Zhou, Li-Qian, Anh, Vo V., Chu, Ka-Hou, Long, Shun-Chao, & Deng, Ji-Qing
(2005)
Phylogeny of prokaryotes and chloroplasts revealed by a simple composition approach on all protein sequences from complete genomes without sequence alignment.

*Journal of Molecular Evolution*,*60*(4), pp. 538-545.
187

37

29

Anh, Vo, Deng, Ji-Qing, Long, Shun-Chao, Yu, Zu-Guo, & Zhou, Li-Qian
(2005)
A Fractal Method to Distinguish Coding and Non-Coding Sequences in a Complete Genome Based on a Number Sequence Representation.

*Journal of Theoretical Biology*,*232*(4), pp. 559-567.
131

29

21

Anh, Vo, Lam, K, Leung, Y, & Yu, Zu-Guo
(2005)
Multifractal Characterization of Hong Kong Air Quality Data.

*Environmetrics*,*16*(1), pp. 1-12.
53

Anh, Vo, Wanliss, J, Watson, S, & Yu, Zu-Guo
(2005)
Multifractal Modeling of Magnetic Storms via Symbolic Dynamics Analysis.

*Journal of Geophysical Research*,*110*, pp. 1-11.
56

27

30

Anh, Vo, Wanliss, J, Watson, S, & Yu, Zu-Guo
(2005)
Prediction of Magnetic Storm Events Using the Dst Index.

*Nonlinear Processes in Geophysics*,*12*(6), pp. 799-806.
53

11

Yu, Zu-Guo, Anh, Vo V., & Lau, Ka-Sing
(2004)
Chaos Game Representation of Protein Sequences based on the detailed HP model and their multifractal and correlational analysis.

*Journal of Theoretical Biology*,*226*(3), pp. 341-348.
388

84

75

Chu, Ka-Hou, Qi, Ji, Yu, Zu-Guo, & Anh, Vo V.
(2004)
Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes.

*Molecular Biology and Evolution*,*21*(1), pp. 200-206.
152

52

47

Yu, Zu-Guo
(2004)
Fourier Transform and Mean Quadratic Variation of Bernoulli Convolution on Homogeneous Cantor Set.

*Chaos, Solitons and Fractals*,*21*, pp. 151-157.
99

2

2

Anh, Vo, Lau, Ka-Sing, & Yu, Zu-Guo
(2004)
Fractal Analysis of Measure Representation of Large Proteins Based on the Detailed HP Model.

*Physica A*,*337*, pp. 171-184.
111

19

17

Yu, Zu-Guo, Anh, Vo V., & Lau, Ka-Sing
(2003)
Multifractal and correlation analyses of protein sequences from complete genomes.

*Physical Review E (Statistical, Nonlinear, and Soft Matter Physics)*,*68*(2), 021913-1.
344

60

47

Anh, Vo, Chu, Ka-Hou, Lau, Ka-Sing, & Yu, Zu-Guo
(2003)
The Genomic Tree of Living Organisms Based on a Fractal Model.

*Physics Letters A*,*317*, pp. 293-302.
108

18

14

Anh, Vo, Lau, Ka-Sing, & Yu, Zu-Guo
(2003)
Iterated Function System and Multifractional Analysis of Biological Sequences.

*International Journal of Modern Physics B*,*17*(22, 23), pp. 4367-4375.
125

Yu, Zu-Guo, Anh, Vo V., & Lau, Ka-Sing
(2001)
Measure representation and multifractal analysis of complete genomes.

*Physical Review E (Statistical, Nonlinear, and Soft Matter Physics)*,*64*(3), 031903.
216

76

62

Anh, Vo, Wang, Bin, & Yu, Zu-Guo
(2001)
Correlation Property of Length Sequences Based on Global Structure of the Complete Genome.

*Physical Review E*, pp. 1-8.
41

26

Anh, Vo, Lau, Ka-Sing, & Yu, Zu-Guo
(2001)
Multifractal Characterisation of Length Sequences of Coding and Noncoding Segments in a Complete Genome.

*Physica A*, pp. 351-361.
27

28

Anh, Vo, Lau, Ka-Sing, & Yu, Zu-Guo
(2001)
Multifractal Characterization of Complete Genomes.

*Journal of Physics A: Mathematical and General*, pp. 7127-7139.
28

27

Anh, Vo & Yu, Zu-Guo
(2001)
Time Series Model Based on Global Structure of Complete Genome.

*Chaos, Solitons and Fractals*, pp. 1827-1834.
21

22

## Conference Paper

Zhou, Li-Qian, Yu, Zu-Guo, Han, Guo-Sheng, Zhou, Guang-ming, & Wang, Desheng
(2012)
Some comparison on whole-proteome phylogeny of large dsDNA viruses based on dynamical language approach and feature frequency profiles method. In
Liu, Y (Ed.)

*Natural Computation (ICNC), 2012 Eighth International Conference on*, IEEE, China, pp. 904-908.

Zhu, Shaoming, Yu, Zu-Guo, Anh, Vo, & Yang, Sheng-Yuan
(2010)
Analysing the similarity of proteins based on a new approach to empirical mode decomposition. In
Chou, K (Ed.)

*Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference on*, IEEE, China, pp. 1-4.

Anh, Vo, Chu, K, Li, C, Yu, Zu-Guo, & Zhou, Li-Qian
(2008)
Phylogenetic analysis of polyomaviruses based on their complete genomes. In
Kellenberger, P (Ed.)

*Natural Computation, 2008. ICNC '08. Fourth International Conference on*, IEE Computer Society, China, Shandong, Jinan, pp. 80-84.
3

2

Anh, Vo, Yang, Jian-Yi, & Yu, Zu-Guo
(2008)
Protein structure classification based on chaos game representation. In
Kellenberger, P (Ed.)

*The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008)*, 18 - 20 October 2008, China, Shandong, Jinan.
1

1

Anh, Vo, Yu, Zu-Guo, & Zhou, Yu
(2008)
Protein structure classification using local holder exponents estimated by wavelet transfom. In
Kellenberger, P (Ed.)

*The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008)*, 18 - 20 October 2008, China, Shandong, Jinan.

Yu, Zu-Guo, Zhou, Li-Qian, Anh, Vo V., Chu, Ka-Hou, Li, C. P., & Chen, Y. J.
(2007)
Distance-based analysis to reveal vertebrate phylogeny without sequence alignment using complete mitochondrial genomes. In
Callaos, N., Lesso, W., Zinn, C., & Zmazek, B. (Eds.)

*11th World Multi-Conference on Systemics, Cybernetics and Informatics: WMSCI 2007*, 8-11 July 2007, Florida, USA.
230

2

Zhou, Yu, Zhou, Li-Qian, Yu, Zu-Guo, & Anh, Vo V.
(2007)
Distinguish Coding And Noncoding Sequences In A Complete Genome Using Fourier Transform. In

*Third International Conference on Natural Computation (ICNC 2007)*, 24-27 August 2007, Haikou, China.
279

7

2

Zhou, Li-Qian, Yu, Zu-Guo, Nie, P. R., Liao, F. F., Anh, Vo V., & Chen, Y. J.
(2007)
Log-correlation Distance And Fourier Transform With Kullback-Leibler Divergence Distance For Construction Of Vertebrate Phylogeny Using Complete Mitochondrial Genomes. In

*Third International Conference on Natural Computation (ICNC 2007)*, 24-27 August 2007, Haikou, China.
321

4

Yu, Zu-Guo, Anh, Vo V., Zhou, Yu, & Zhou, Li-Qian
(2007)
Numerical sequence representation of DNA sequences and methods to distinguish coding and non-coding sequences in a complete genome. In
Callaos, N., Lesso, W., Zinn, C., & Zmazek, B. (Eds.)

*WMSCI 2007*, The International Institute of Informatics and Systemics (IIIS), Florida, USA, pp. 171-176.
321

1

Yu, Zu-Guo, Mao, Z., Zhou, Li-Qian, & Anh, Vo V.
(2007)
A mutual information based sequence distance for vertebrate phylogeny using complete mitochondrial genomes. In

*Third International Conference on Natural Computation (ICNC 2007)*, 24-27 August 2007, Haikou, China.
428

8

Anh, Vo, Yu, Zu-Guo, & Zhou, Li-Qian
(2005)
Fractal and Dynamical Language Methods to Construct Phylogenetic Tree Based on Protein Sequences from Complete Genomes. In
Wang, L, Chen, K, & Ong, Y (Eds.)

*Lecture Notes in Computer Science (LNCS 3611) - Advances in Natural Computation: First International Conference, ICNC 2005*, 27-29 August 2005, China, Changsha.
3

3

Anh, Vo & Yu, Zu-Guo
(2005)
Phylogenetic Tree Based on Complete Genomes Using Fractal and Correlation Analyses without Sequence Alignment. In
Callaos, N, Chavez, R, Franger, S, Raut, R, & He, Z (Eds.)

*Proceedings of The 9th World Multi-Conference on Systemics, Cybernetics and Informatics 2005 (WMSCI 2005)*, 10 July - 13 July 2005, United States of America, Florida, Orlando.

Anh, Vo & Yu, Zu-Guo
(2004)
Phylogenetic Tree of Prokaryotes Based on Complete Genomes using Fractal and Correlation Analyses. In

*Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC2004).*, 18-22 January 2004, Dunedin, New Zealand.

Anh, Vo, Bajracharya, Kiran, Su, Ninghu, & Yu, Zu-Guo
(2001)
Anthropogenically-Induced Fractal Tidal Waves in Coastal Aquifers at Bundaberg, Queensland, Australia. In
Canberra, A (Ed.)

*Proceedings of the International Congress on Modelling and Simulation Volume 2: Natural Systems (Part 2)*, 10-13 December 2001.