Items where Subject is "Australian and New Zealand Standard Research Classification > MATHEMATICAL SCIENCES (010000) > APPLIED MATHEMATICS (010200) > Biological Mathematics (010202)"

Subjects classification (32824)
- Australian and New Zealand Standard Research Classification (32824)
  - MATHEMATICAL SCIENCES (010000) (1132)
    - APPLIED MATHEMATICS (010200) (432)
      - Biological Mathematics (010202) (87)

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Number of items at this level: 87.

A

Adams, Matthew P., Mallet, Daniel G., & Pettet, Graeme J. (2012) Active regulation of the epidermal calcium profile. Journal of Theoretical Biology.

Adams, Matthew P., Mallet, Daniel G., & Pettet, Graeme J. (2012) Solution methods for advection-diffusion-reaction equations on growing domains and subdomains, with application to modelling skin substitutes. In Gu, YuanTong & Saha, Suvash C. (Eds.) Proceedings of 4th International Conference on Computational Methods (ICCM2012), Gold Coast, Qld. (In Press)

Adams, Matthew P., Mallet, Daniel G., & Pettet, Graeme J. (2012) A continuum model of the growth of engineered epidermal skin substitutes. In Proceedings of the 10th Biennial Engineering Mathematics and Applications Conference, The ANZIAM Journal, Australia and New Zealand Industrial and Applied Mathematics, University of Technology Sydney, N.S.W, C90-C109.

Anh, Vo, Chen, Yi-Ping, & Yu, Zu-Guo (2005) Visualization and Fractal Analysis of Biological Sequences. In Chen, Y (Ed.) Bioinformatics Technologies. Springer-Verlag, Germany, pp. 313-351.

Anh, Vo, Deng, Ji-Qing, Long, Shun-Chao, Yu, Zu-Guo, & Zhou, Li-Qian (2005) A Fractal Method to Distinguish Coding and Non-Coding Sequences in a Complete Genome Based on a Number Sequence Representation. Journal of Theoretical Biology, 232(4), pp. 559-567.

Anh, Vo, Yang, Jian-Yi, & Yu, Zuguo (2008) Protein structure classification based on chaos game representation. In Kellenberger, P (Ed.) The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008), 18 - 20 October 2008, China, Shandong, Jinan.

Anh, Vo & Yu, Zu-Guo (2005) Phylogenetic Tree Based on Complete Genomes Using Fractal and Correlation Analyses without Sequence Alignment. In Callaos, N, Chavez, R, Franger, S, Raut, R, & He, Z (Eds.) Proceedings of The 9th World Multi-Conference on Systemics, Cybernetics and Informatics 2005 (WMSCI 2005), 10 July - 13 July 2005, United States of America, Florida, Orlando.

Anh, Vo & Yu, Zu-Guo (2004) Phylogenetic Tree of Prokaryotes Based on Complete Genomes using Fractal and Correlation Analyses. In Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC2004)., 18-22 January 2004, Dunedin, New Zealand.

Anh, Vo, Yu, Zu-Guo, & Zhou, Li-Qian (2005) Fractal and Dynamical Language Methods to Construct Phylogenetic Tree Based on Protein Sequences from Complete Genomes. In Wang, L, Chen, K, & Ong, Y (Eds.) Lecture Notes in Computer Science (LNCS 3611) - Advances in Natural Computation: First International Conference, ICNC 2005, 27-29 August 2005, China, Changsha.

Anh, Vo, Yu, Zuguo, & Zhou, Yu (2008) Protein structure classification using local Holder exponents estimated by wavelet transfom. In Kellenberger, P (Ed.) The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008), 18 - 20 October 2008, China, Shandong, Jinan.

Araujo, Robyn & McElwain, Sean (2003) An Anisotropic Model of Vascular Tumor Growth: Implications for Vascular Collapse. In Bathe, K (Ed.) Computational Fluid and Solid Mechanics, 17 - 20 June 2003, Massachusetts Institute of Technology Cambridge, USA.

Araujo, Robyn & McElwain, Sean (2003) The Genesis of Residual Stresses and Vascular Collapse in Solid Tumours. In May, R & Blyth, W (Eds.) EMAC 2003 Proceedings, 9 - 11 July 2003, University of Technology, Sydney, New South Wales.

Araujo, Robyn & McElwain, Sean (2005) A Mixture Theory for the Genesis of Residual Stresses in Growing Tissues II: Solutions to the Biphasic Equations for a Multicell Spheroid. SIAM Journal on Applied Mathematics, 66(2), pp. 447-467.

Araujo, Robyn & McElwain, Sean (2005) The Nature of the Stresses Induced During Tissue Growth. Applied Mathematics Letters, 18(10), pp. 1081-1088.

Araujo, Robyn & McElwain, Sean (2006) The Role of Mechanical Host-Tumour Interactions in the Collapse of Tumour Blood Vessels and Tumour Growth Dynamics. Journal of Theoretical Biology, 238, pp. 817-827.

B

Bavoil, Patrik, McElwain, Sean, Timms, Peter, & Wilson, David (2006) Type III Secretion, Contact-Dependent Model For The Intracellular Development of Chlamydia. Bulletin of Mathematical Biology, 68(1), pp. 161-178.

Beiko, Robert G., Keith, Jonathan M., Harlow, Timothy J., & Ragan, Mark A (2006) Searching for Convergence in Phylogenetic Markov Chain Monte Carlo. Systematic Biology, 55(4), pp. 553-565.

Belward, John A., Turner, Ian W., & Oqielat, Moa'Ath (2009) Numerical investigations of linear least squares methods for derivative estimation. ANZIAM Journal, 50, C844-C857.

C

Chen, Gongfa, Pettet, Graeme J., Pearcy, Mark J., & McElwain, Sean (2007) Comparison of two numerical approaches for bone remodelling. Medical Engineering and Physics, 29(1), pp. 134-139.

Chen, Gongfa, Pettet, Graeme J., Pearcy, Mark J., & McElwain, Sean (2007) Modelling external bone adaptation using evolutionary structural optimisation. Biomechanical and Modeling in Mechanobiology, 6(4), pp. 275-285.

Colasanti, Ric, Dawson, Rebecca, Malda, Jos, Pettet, Graeme, & Please, Colin (2008) A cellular automata simulation of calcium driven tissue differentiation in human skin equivalent models. In Adamatzky, A, Alonso-Sanz, R, Lawniczak, A, Juarez Martinez, G, Morita, K, & Worsch, T (Eds.) Proceedings of Automata 2008: Theory and applications of cellular automata, 12-14 June 2008, United Kingdom, Bristol.

D

Denman, Paula, Harkin, Damien, McElwain, Sean, & Upton, Zee (2006) Mathematical Modelling of Aerosolised Skin Grafts Incorporating Keratinocyte Clonal Subtypes. Bulletin of Mathematical Biology, 69(1), pp. 157-179.

Denman, Paula, McElwain, Sean, & Norbury, John (2007) Analysis of Travelling Waves Associated with the Modelling of Aerosolised Skin Grafts. Bulletin of Mathematical Biology, 69(2), pp. 495-523.

Dillon, Michael P., Barker, Timothy M., & Pettet, Graeme J. (2008) Effect of inaccuracies in anthropometric data and linked-segment inverse dynamic modeling on kinetics of gait in persons with partial foot amputation. Journal of Rehabilitation Research and Development, 45(9), pp. 1303-1316.

de Pillis, Lisette G., Mallet, Daniel G., & Radunskaya, Ami E. (2006) Spatial Tumor-Immune Modeling. Computational and Mathematical Methods in Medicine, 7(2-3), pp. 159-176.

F

Fernando, Anthony, Landman, Kerry A., & Simpson, Matthew (2010) Nonlinear diffusion and exclusion processes with contact interactions. Physical Review E (PRE), 81(1), 011903-1---11903-11.

Fulford, G.R., Lee, X.J., Berman, D., & Hamilton, G.S. (2011) Interaction of myxomatosis and Rabbit Haemorrhagic Disease in wild rabbit. In Chan, F., Marinova, D, & Anderssen, R.S. (Eds.) MODSIM2011, 19th International Congress on Modelling and Simulation., Modelling and Simulation Society of Australia and New Zealand, Perth, WA, pp. 912-918.

Fulford, G.R., Roberts, M.G., & Heesterbeek, J.A.P. (2002) The Metapopulation Dynamics of an Infectious Disease: Tuberculosis in Possums. Theoretical Population Biology, 61(1), pp. 15-29.

G

Gardner, Trevor N. & Mishra, Sanjay K. (2003) The biomechanical environment of a bone fracture and its influence upon the morphology of healing. Medical Engineering and Physics, 25(6), pp. 455-464.

Gardner, Trevor N., Mishra, Sanjay K., & Marks, Laurence (2004) The role of Osteogenic Index, Octahedral Shear Stress and Dilational stress in the ossification of a fracture callus. Medical Engineering and Physics, 26(6), pp. 493-501.

Gordon, James J. & Towsey, Michael W. (2005) SVM Based Prediction of Bacterial Transcription Start Sites. In Proceedings 6th International Conference on Intelligent Data Engineering and Automated Learning (IDEAL’05), July 2005, Brisbane, Australia.

204

Gordon, John J., Towsey, Michael W., Hogan, James M., Mathews, Sarah A., & Timms, Peter (2006) Improved prediction of bacterial transcription start sites. Bioinformatics, 22(2), pp. 142-148.

H

Hsieh, Mike, McCue, Scott W., Moroney, Timothy J., & Nelson, Mark I. (2011) Drug diffusion from polymeric delivery devices : a problem with two moving boundaries. The ANZIAM Journal, 52, C549-C566.

Hurst, Cameron P., Catterall, Carla P., & Chaseling, Janet (2008) A comparison of two methods for generating artificial multi-assemblage ecological datasets. Ecological Informatics, 3(4-5), pp. 286-294.

J

Johnston, Stuart, Simpson, Matthew, & Baker, Ruth (2012) Mean-field descriptions of collective migration with strong adhesion. Physical Review E, 85(5), 051922-1 .

K

Keith, Jonathan M, Adams, Peter, Bryant, Darryn, Kroese, Dirk P, Mitchelson, Keith R, Cochran, Duncan A., et al. (2002) A Simulated Annealing Algorithm for Finding Consensus Sequences. Bioinformatics, 18(11), pp. 1494-1499.

Keith, Jonathan M., Adams, Peter, Bryant, Darryn, Cochran, Duncan A., Lala, Gita H., & Mitchelson, Keith R. (2004) Algorithms for Sequence Analysis via Mutagenesis. Bioinformatics, 20(15), pp. 2401-2410.

Kitto, Kirsty & Kortschak, R. Daniel (2013) Contextual models and the non-Newtonian paradigm. Progress in Biophysics & Molecular Biology.

L

Landman, Kerry A., Pettet, Graeme J., & Newgreen, Donald F. (2003) Chemotactic cellular migration: Smooth and discontinous travelling wave solutions. SIAM Journal on Applied Mathematics, 63(5), pp. 1666-1681.

253

Lewis, Miranda C., MacArthur, Ben D., Malda, Jos, Pettet, Graeme J., & Please, Colin P. (2005) Heterogeneous proliferation within engineered cartilaginous tissue: The role of oxygen tension. Biotechnology and Bioengineering, 91(5), pp. 607-615.

M

Macarthur, Ben, Pettet, Graeme, & Please, Colin (2005) A Mathematical Model of Dynamic Glioma-Host Interactions: Receptor-Mediated Invasion and Local Proteolysis. Mathematical Medicine and Biology, 22(3), pp. 247-264.

Maetschke, Stefan R., Towsey, Michael W., & Hogan, James M. (2006) Bacterial promoter modelling and prediction for E. coli and B. subtilis with Beagle. In Workshop on Intelligent Systems for Bioinformatics (WISB-2006), 4th December 2006, Hobart, Tasmania.

345

Malda, Jos & Pettet, Graeme (2008) Mathematicians in biologists' clothes......a clarion call for collaboration. In Flynne, W (Ed.) Biotechnology and Bioengineering. Nova Science Publications, United States of America, New York, Hauppauge, pp. 3-5.

Mallet, Daniel G., Heymer, Kelly-Jean, & Wilson, David P. (2008) A hybrid CA-PDE Model of chlamydia trachomatis infection in the female genital tract. In 6th International Congress on Industrial and Applied Mathematics, 16-20 July 2007, Zurich. (Unpublished)

181

Mallet, Daniel G. & Pettet, Graeme J. (2008) Haptotaxis in Pre-necrotic Avascular Tumours. In Wilson, Lachlan B. (Ed.) Mathematical Biology Research Trends. Nova Science Publishers, Hauppauge, NY.

Mallet, Daniel G. & Pettet, Graeme J. (2006) A Mathematical Model of Integrin-Mediated Haptotactic Cell Migration. Bulletin of Mathematical Biology, 68(2), pp. 231-253.

301

Mallet, Daniel G. & Trisilowati, (2012) In silico experimental modeling of cancer treatment. ISRN Oncology, 2012.

Mallet, Daniel G., Turner, Ian W., & Pettet, Graeme J. (2004) Application of the control volume method to a mathematical model of cell migration. The ANZIAM Journal, 45(E), C891-C904.

Mallet, Daniel G. & de Pillis, Lisette G. (2006) A cellular automata model of tumor-immune system interactions. Journal of Theoretical Biology, 239(3), pp. 334-350.

711

Mallet, Dann, Bagher-Oskouei, Masoumeh, Farr, Anna Charisse, Simpson, Daniel Peter, & Heymer, Kelly-Jean (2011) A mathematical model of chlamydial infection incorporating spatial movement of chlamydial particles. .

177

Mallet, Dann G. (2008) Haptotaxis in Tumour Growth and Invasion : A Mathematical Modelling Approach. VDM Verlag Dr. Muller Aktiengesellschaft & Co. KG, Germany.

Mallet, Dann G., Heymer, Kelly-Jean, Rank, Roger G., & Wilson, David P. (2009) Chlamydial infection and spatial ascension of the female genital tract : a novel hybrid cellular automata and continuum mathematical model. FEMS Immunology & Medical Microbiology, 57(2), pp. 173-182.

McBryde, Emma, McElwain, Sean, & Pettitt, Tony (2007) A Stochastic Mathematical Model of Methicillin Resistant Staphylococcus Aureus Transmission in an Intensive Care Unit: Predicting the Impact of Interventions. Journal of Theoretical Biology, 245(3), pp. 470-481.

McCue, Scott W., Bartsch, Thomas, Dyson, Rosemary, Beguerisse-Diaz, Mariano, & Jensen, Oliver (2009) Modelling cell separation during plant organ abscission. The Centre for Plant Integrative Biology, University of Nottingham.

McElwain, D. L. S., Jones, M. B., Fulford, G., Collins, M. J., & Roberts, A. P. (2006) The effect of the lipid layer on tear film behaviour. Bulletin of Mathematical Biology, 68(6), pp. 1355-1381.

McElwain, Sean, Addison-Smith, Beth, & Maini, Philip K. (2008) A simple mechanistic model of sprout spacing in tumour-associated angiogenesis. Journal of Theoretical Biology, 250(1), pp. 1-15.

McElwain, Sean, Cumming, Benjamin Donald, & Upton, Zee (2009) A mathematical model of wound healing and subsequent scarring. Journal of The Royal Society Interface. (In Press)

McElwain, Sean & Wilson, David (2005) Diffusion Theory can be Applied to Antibodies Attaching to Ligand Sites. The ANZIAM Journal, 46(4), pp. 495-505.

Mcbryde, Emma & McElwain, Sean (2006) A Mathematical Model Investigating the Impact of an Environmental Reservoir on Prevalence and Control of Vancomycin-Resistant Enterococci. Journal of Infectious Diseases, 193(10), pp. 1473-1474.

Menon, Shakti N., Flegg, Jennifer, McCue, Scott W., Schugart, Richard C., Dawson, Rebecca A., & McElwain, Sean (2012) Modelling the interaction of keratinocytes and fibroblasts during normal and abnormal wound healing processes. Proceedings of the Royal Society B, 279, pp. 3329-3338.

Murphy, Kelly E., Hall, Cameron L., Maini, Philip K., McCue, Scott W., & McElwain, Sean (2012) A fibrocontractive mechanochemical model of dermal wound closure incorporating realistic growth factor kinetics. Bulletin of Mathematical Biology, 74(5), pp. 1143-1170.

Murphy, Kelly E., Hall, Cameron L., McCue, Scott W., & McElwain, D.L. Sean (2011) A two-compartment mechanochemical model of the roles of transforming growth factor-beta and tissue tension in dermal wound healing. Journal of Theoretical Biology, 272(1), pp. 145-159.

Murphy, Kelly E., McCue, Scott W., & McElwain, Sean (2012) Clinical strategies for the alleviation of contractures from a predictive mathematical model of dermal repair. Wound Repair and Regeneration, 20(2), pp. 194-202.

O

Oqielat, Moa'Ath, Belward, John A., Turner, Ian W., & Loch, B. I. (2007) A Hybrid Clough-Tocher Radial Basis Function Method for Modelling Leaf Surfaces. In MODSIM 2007 International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

102

P

Plank, Michael & Simpson, Matthew (2012) Models of collective cell behaviour with crowding effects : comparing lattice-based and lattice-free approaches. Journal of the Royal Society Interface.

S

Simpson, Matthew, Baker, Ruth, & McCue, Scott W. (2011) Models of collective cell spreading with variable cell aspect ratio : a motivation for degenerate diffusion models. Physical Review E (PRE), 83, 021901-1 .

Simpson, Matthew, Binder, Benjamin J., Haridas, Parvathi, Wood, Benjamin, Treloar, Katrina, McElwain, Sean, et al. (2013) Experimental and modelling investigation of monolayer development with clustering. Bulletin of Mathematical Biology. (In Press)

Simpson, Matthew & Ellery, Adam (2012) An analytical solution for diffusion and nonlinear uptake of oxygen in a spherical cell. Applied Mathematical Modelling, 36(7), pp. 3329-3334.

Simpson, Matthew, Ellery, Adam, McCue, Scott W., & Baker, Ruth (2013) Critical timescales and time intervals for coupled linear processes. ANZIAM Journal. (In Press)

Simpson, Matthew, Foy, Brody, & McCue, Scott W. (2013) Travelling waves for a velocity–jump model of cell migration and proliferation. Mathematical Biosciences. (In Press)

Simpson, Matthew, Landman, Kerry A., & Hughes, Barry (2010) Cell invasion with proliferation mechanisms motivated by time-lapse data. Physica A : Statistical Mechanics and its Applications, 389(18), pp. 3779-3790.

Simpson, Matthew, Landman, Kerry A., Hughes, Barry, & Fernando, Anthony (2010) A model for mesoscale patterns in motile populations. Physica A: Statistical Mechanics and its Applications, 389(7), pp. 1412-1424.

Simpson, Matthew & Mercer, Geoff (2012) Editorial : infectious disease modelling. ANZIAM Journal, 54(1-2).

Simpson, Matthew, Towne, Chris L., McElwain, Sean, & Upton, Zee (2010) Migration of breast cancer cells : understanding the roles of volume exclusion and cell-to-cell adhesion. Physical Review E (PRE), 82(4), 041901-1---41901-9.

Sofronov, George, Evans, Gareth E., Keith, Jonathan M., & Kroese, Dirk P. (2007) Identifying Change-points in Biological Sequences via Sequential Importance Sampling. In Oxley, Les & Kulasiri, Don (Eds.) MODSIM 2007 International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

T

Treloar, Katrina, Simpson, Matthew, & McCue, Scott W. (2013) Velocity jump processes with proliferation. Journal of Physics A : Mathematical and General, 46(1), pp. 1-17.

Trisilowati,, McCue, Scott, & Mallet, Dann (2012) An improved model of tumour-immune system interactions. In Sri Wahyuni, (Ed.) Proceedings of the 6th Southeast Asian Mathematical Society – Gadjah Mada University International Conference on Mathematics and its Applications 2011, Yogyakarta University, Indonesia, pp. 895-904.

W

Wilson, Cameron J., Pettet, Graeme J., Chen, Gongfa, Mishra, Sanjay K., Steck, Roland, Wullschleger, Martin E., et al. (2006) Is callus formation optimised for fracture stability? A computational study. In 10th Conference of the International Society for Fracture Repair, 22-24 May 2006, Adelaide, Australia.

116

Y

Yang, Jian-Yi, Yu, Zuguo, & Anh, Vo (2007) Correlations Between Designability and Various Structural Characteristics of Protein Lattice Models. Journal of Chemical Physics, 126(19), pp. 1-12.

Yang, Qianqian, Moroney, Timothy J., Burrage, Kevin, Turner, Ian, & Liu, Fawang (2011) Novel numerical methods for time-space fractional reaction diffusion equations in two dimensions. Australian and New Zealand Industrial and Applied Mathematics Journal, 52, C395-C409.

154

Yu, Zuguo, Anh, Vo V., Zhou, Yu, & Zhou, Li-Qian (2007) Numerical Sequence Representation of DNA Sequences and Methods To Distinguish Coding And Non-Coding Sequences in a Complete Genome. In Callaos, N., Lesso, W., Zinn, C., & Zmazek, B. (Eds.) 11th World Multi-Conference on Systemics, Cybernetics and Informatics: WMSCI 2007, 8-11 July 2007, Florida, USA.

212

Yu, Zuguo, Mao, Z., Zhou, Li-Qian, & Anh, Vo V. (2007) A Mutual Information Based Sequence Distance For Vertebrate Phylogeny Using Complete Mitochondrial Genomes. In Third International Conference on Natural Computation (ICNC 2007), 24-27 August 2007, Haikou, China.

257

Yu, Zuguo, Zhan, Xiao-Wen, Han, Guo-Sheng, Wang, Roger, Anh, Vo, & Chu, Ka-Hou (2010) Proper Distance Metrics for Phylogenetic Analysis Using Complete Genomes without Sequence Alignment. International Journal of Molecular Sciences, 11(3), pp. 1141-1154.

Yu, Zuguo, Zhou, Li-Qian, Anh, Vo V., Chu, Ka-Hou, Li, C. P., & Chen, Y. J. (2007) Distance-based analysis to reveal vertebrate phylogeny without sequence alignment using complete mitochondrial genomes. In Callaos, N., Lesso, W., Zinn, C., & Zmazek, B. (Eds.) 11th World Multi-Conference on Systemics, Cybernetics and Informatics: WMSCI 2007, 8-11 July 2007, Florida, USA.

179

Z

Zhou, Li-Qian, Yu, Zuguo, Nie, P. R., Liao, F. F., Anh, Vo V., & Chen, Y. J. (2007) Log-correlation Distance And Fourier Transform With Kullback-Leibler Divergence Distance For Construction Of Vertebrate Phylogeny Using Complete Mitochondrial Genomes. In Third International Conference on Natural Computation (ICNC 2007), 24-27 August 2007, Haikou, China.

236

Zhou, Yu, Yu, Zu-Guo, & Anh, Vo V. (2007) Cluster protein structures using recurrence quantification analysis on coordinates of alpha-carbon atoms of proteins. Physics Letters. Section A: General, Atomic and Solid State Physics, 368(3/4), pp. 314-319.

111

Zhou, Yu, Zhou, Li-Qian, Yu, Zu-Guo, & Anh, Vo V. (2007) Distinguish Coding And Noncoding Sequences In A Complete Genome Using Fourier Transform. In Third International Conference on Natural Computation (ICNC 2007), 24-27 August 2007, Haikou, China.

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