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Items where Subject is "Australian and New Zealand Standard Research Classification > MATHEMATICAL SCIENCES (010000) > APPLIED MATHEMATICS (010200) > Biological Mathematics (010202)"

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Number of items at this level: 74.

A

Adams, Matthew P., Mallet, Daniel G., & Pettet, Graeme J. (2011) The epidermal calcium profile is both actively and passively regulated. .
Number of full-text downloads 8

Anh, Vo, Chen, Yi-Ping, & Yu, Zu-Guo (2005) Visualization and Fractal Analysis of Biological Sequences. In Chen, Y (Ed.) Bioinformatics Technologies. Springer-Verlag, Germany, pp. 313-351.

Anh, Vo, Deng, Ji-Qing, Long, Shun-Chao, Yu, Zu-Guo, & Zhou, Li-Qian (2005) A Fractal Method to Distinguish Coding and Non-Coding Sequences in a Complete Genome Based on a Number Sequence Representation. Journal of Theoretical Biology, 232(4), pp. 559-567.
Number of full-text downloads 11
Number of citations in Scopus 18
Number of citations in Web of Science 9

Anh, Vo, Yang, Jian-Yi, & Yu, Zuguo (2008) Protein structure classification based on chaos game representation. In Kellenberger, P (Ed.) The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008), 18 - 20 October 2008, China, Shandong, Jinan.
Number of citations in Scopus 1

Anh, Vo & Yu, Zu-Guo (2005) Phylogenetic Tree Based on Complete Genomes Using Fractal and Correlation Analyses without Sequence Alignment. In Callaos, N, Chavez, R, Franger, S, Raut, R, & He, Z (Eds.) Proceedings of The 9th World Multi-Conference on Systemics, Cybernetics and Informatics 2005 (WMSCI 2005), 10 July - 13 July 2005, United States of America, Florida, Orlando.

Anh, Vo & Yu, Zu-Guo (2004) Phylogenetic Tree of Prokaryotes Based on Complete Genomes using Fractal and Correlation Analyses. In Proceedings of the Second Asia-Pacific Bioinformatics Conference (APBC2004)., 18-22 January 2004, Dunedin, New Zealand.

Anh, Vo, Yu, Zu-Guo, & Zhou, Li-Qian (2005) Fractal and Dynamical Language Methods to Construct Phylogenetic Tree Based on Protein Sequences from Complete Genomes. In Wang, L, Chen, K, & Ong, Y (Eds.) Lecture Notes in Computer Science (LNCS 3611) - Advances in Natural Computation: First International Conference, ICNC 2005, 27-29 August 2005, China, Changsha.
Number of citations in Scopus 2
Number of citations in Web of Science 3

Anh, Vo, Yu, Zuguo, & Zhou, Yu (2008) Protein structure classification using local Holder exponents estimated by wavelet transfom. In Kellenberger, P (Ed.) The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008), 18 - 20 October 2008, China, Shandong, Jinan.

Araujo, Robyn & McElwain, Sean (2003) An Anisotropic Model of Vascular Tumor Growth: Implications for Vascular Collapse. In Bathe, K (Ed.) Computational Fluid and Solid Mechanics, 17 - 20 June 2003, Massachusetts Institute of Technology Cambridge, USA.

Araujo, Robyn & McElwain, Sean (2003) The Genesis of Residual Stresses and Vascular Collapse in Solid Tumours. In May, R & Blyth, W (Eds.) EMAC 2003 Proceedings, 9 - 11 July 2003, University of Technology, Sydney, New South Wales.

Araujo, Robyn & McElwain, Sean (2005) A Mixture Theory for the Genesis of Residual Stresses in Growing Tissues II: Solutions to the Biphasic Equations for a Multicell Spheroid. SIAM Journal on Applied Mathematics, 66(2), pp. 447-467.
Number of citations in Scopus 15
Number of citations in Web of Science 17

Araujo, Robyn & McElwain, Sean (2005) The Nature of the Stresses Induced During Tissue Growth. Applied Mathematics Letters, 18(10), pp. 1081-1088.
Number of citations in Scopus 4
Number of citations in Web of Science 5

Araujo, Robyn & McElwain, Sean (2006) The Role of Mechanical Host-Tumour Interactions in the Collapse of Tumour Blood Vessels and Tumour Growth Dynamics. Journal of Theoretical Biology, 238, pp. 817-827.
Number of citations in Scopus 4
Number of citations in Web of Science 4

B

Bavoil, Patrik, McElwain, Sean, Timms, Peter, & Wilson, David (2006) Type III Secretion, Contact-Dependent Model For The Intracellular Development of Chlamydia. Bulletin of Mathematical Biology, 68(1), pp. 161-178.
Number of citations in Scopus 17
Number of citations in Web of Science 20

Beiko, Robert G., Keith, Jonathan M., Harlow, Timothy J., & Ragan, Mark A (2006) Searching for Convergence in Phylogenetic Markov Chain Monte Carlo. Systematic Biology, 55(4), pp. 553-565.
Number of citations in Scopus 26
Number of citations in Web of Science 25

Belward, John A., Turner, Ian W., & Oqielat, Moa'Ath (2009) Numerical investigations of linear least squares methods for derivative estimation. ANZIAM Journal, 50, C844-C857.
Number of full-text downloads 8

C

Chen, Gongfa, Pettet, Graeme J., Pearcy, Mark J., & McElwain, Sean (2007) Comparison of two numerical approaches for bone remodelling. Medical Engineering and Physics, 29(1), pp. 134-139.
Number of citations in Scopus 9
Number of citations in Web of Science 4

Chen, Gongfa, Pettet, Graeme J., Pearcy, Mark J., & McElwain, Sean (2007) Modelling external bone adaptation using evolutionary structural optimisation. Biomechanical and Modeling in Mechanobiology, 6(4), pp. 275-285.
Number of citations in Scopus 4
Number of citations in Web of Science 3

Colasanti, Ric, Dawson, Rebecca, Malda, Jos, Pettet, Graeme, & Please, Colin (2008) A cellular automata simulation of calcium driven tissue differentiation in human skin equivalent models. In Adamatzky, A, Alonso-Sanz, R, Lawniczak, A, Juarez Martinez, G, Morita, K, & Worsch, T (Eds.) Proceedings of Automata 2008: Theory and applications of cellular automata, 12-14 June 2008, United Kingdom, Bristol.

D

Denman, Paula, Harkin, Damien, McElwain, Sean, & Upton, Zee (2006) Mathematical Modelling of Aerosolised Skin Grafts Incorporating Keratinocyte Clonal Subtypes. Bulletin of Mathematical Biology, 69(1), pp. 157-179.
Number of citations in Scopus 5

Denman, Paula, McElwain, Sean, & Norbury, John (2007) Analysis of Travelling Waves Associated with the Modelling of Aerosolised Skin Grafts. Bulletin of Mathematical Biology, 69(2), pp. 495-523.
Number of citations in Scopus 5
Number of citations in Web of Science 5

Dillon, Michael P., Barker, Timothy M., & Pettet, Graeme J. (2008) Effect of inaccuracies in anthropometric data and linked-segment inverse dynamic modeling on kinetics of gait in persons with partial foot amputation. Journal of Rehabilitation Research and Development, 45(9), pp. 1303-1316.
Number of citations in Scopus 4
Number of citations in Web of Science 3

de Pillis, Lisette G., Mallet, Daniel G., & Radunskaya, Ami E. (2006) Spatial Tumor-Immune Modeling. Computational and Mathematical Methods in Medicine, 7(2-3), pp. 159-176.
Number of citations in Scopus 10

F

Fernando, Anthony, Landman, Kerry A., & Simpson, Matthew (2010) Nonlinear diffusion and exclusion processes with contact interactions. Physical Review E (PRE), 81(1), 011903-1---11903-11.
Number of citations in Scopus 5
Number of citations in Web of Science 4

Fulford, G.R., Roberts, M.G., & Heesterbeek, J.A.P. (2002) The Metapopulation Dynamics of an Infectious Disease: Tuberculosis in Possums. Theoretical Population Biology, 61(1), pp. 15-29.
Number of citations in Scopus 42
Number of citations in Web of Science 46

G

Gardner, Trevor N. & Mishra, Sanjay K. (2003) The biomechanical environment of a bone fracture and its influence upon the morphology of healing. Medical Engineering and Physics, 25(6), pp. 455-464.
Number of citations in Scopus 16
Number of citations in Web of Science 16

Gardner, Trevor N., Mishra, Sanjay K., & Marks, Laurence (2004) The role of Osteogenic Index, Octahedral Shear Stress and Dilational stress in the ossification of a fracture callus. Medical Engineering and Physics, 26(6), pp. 493-501.
Number of citations in Scopus 6

Gordon, James J. & Towsey, Michael W. (2005) SVM Based Prediction of Bacterial Transcription Start Sites. In Proceedings 6th International Conference on Intelligent Data Engineering and Automated Learning (IDEAL’05), July 2005, Brisbane, Australia.
Number of full-text downloads 153
Number of citations in Web of Science 1

Gordon, John J., Towsey, Michael W., Hogan, James M., Mathews, Sarah A., & Timms, Peter (2006) Improved prediction of bacterial transcription start sites. Bioinformatics, 22(2), pp. 142-148.
Number of full-text downloads 11
Number of citations in Scopus 28
Number of citations in Web of Science 27

H

Hsieh, Mike, McCue, Scott W., Moroney, Timothy J., & Nelson, Mark I. (2011) Drug diffusion from polymeric delivery devices : a problem with two moving boundaries. The ANZIAM Journal, 52, C549-C566.
Number of full-text downloads 31

Hurst, Cameron P., Catterall, Carla P., & Chaseling, Janet (2008) A comparison of two methods for generating artificial multi-assemblage ecological datasets. Ecological Informatics, 3(4-5), pp. 286-294.
Number of citations in Scopus 1
Number of citations in Web of Science 2

K

Keith, Jonathan M, Adams, Peter, Bryant, Darryn, Kroese, Dirk P, Mitchelson, Keith R, Cochran, Duncan A., et al. (2002) A Simulated Annealing Algorithm for Finding Consensus Sequences. Bioinformatics, 18(11), pp. 1494-1499.
Number of citations in Scopus 18
Number of citations in Web of Science 21

Keith, Jonathan M., Adams, Peter, Bryant, Darryn, Cochran, Duncan A., Lala, Gita H., & Mitchelson, Keith R. (2004) Algorithms for Sequence Analysis via Mutagenesis. Bioinformatics, 20(15), pp. 2401-2410.
Number of citations in Scopus 3
Number of citations in Web of Science 2

L

Landman, Kerry A., Pettet, Graeme J., & Newgreen, Donald F. (2003) Chemotactic cellular migration: Smooth and discontinous travelling wave solutions. SIAM Journal on Applied Mathematics, 63(5), pp. 1666-1681.
Number of full-text downloads 188
Number of citations in Scopus 9

Lewis, Miranda C., MacArthur, Ben D., Malda, Jos, Pettet, Graeme J., & Please, Colin P. (2005) Heterogeneous proliferation within engineered cartilaginous tissue: The role of oxygen tension. Biotechnology and Bioengineering, 91(5), pp. 607-615.
Number of citations in Scopus 53
Number of citations in Web of Science 57

M

Macarthur, Ben, Pettet, Graeme, & Please, Colin (2005) A Mathematical Model of Dynamic Glioma-Host Interactions: Receptor-Mediated Invasion and Local Proteolysis. Mathematical Medicine and Biology, 22(3), pp. 247-264.
Number of citations in Scopus 5
Number of citations in Web of Science 5

Maetschke, Stefan R., Towsey, Michael W., & Hogan, James M. (2006) Bacterial promoter modelling and prediction for E. coli and B. subtilis with Beagle. In Workshop on Intelligent Systems for Bioinformatics (WISB-2006), 4th December 2006, Hobart, Tasmania.
Number of full-text downloads 227

Malda, Jos & Pettet, Graeme (2008) Mathematicians in biologists' clothes......a clarion call for collaboration. In Flynne, W (Ed.) Biotechnology and Bioengineering. Nova Science Publications, United States of America, New York, Hauppauge, pp. 3-5.

Mallet, Daniel G., Heymer, Kelly-Jean, & Wilson, David P. (2008) A hybrid CA-PDE Model of chlamydia trachomatis infection in the female genital tract. In 6th International Congress on Industrial and Applied Mathematics, 16-20 July 2007, Zurich. (Unpublished)
Number of full-text downloads 161

Mallet, Daniel G. & Pettet, Graeme J. (2008) Haptotaxis in Pre-necrotic Avascular Tumours. In Wilson, Lachlan B. (Ed.) Mathematical Biology Research Trends. Nova Science Publishers, Hauppauge, NY.

Mallet, Daniel G. & Pettet, Graeme J. (2006) A Mathematical Model of Integrin-Mediated Haptotactic Cell Migration. Bulletin of Mathematical Biology, 68(2), pp. 231-253.
Number of full-text downloads 227
Number of citations in Scopus 8
Number of citations in Web of Science 8

Mallet, Daniel G. & Trisilowati, (2011) In silico experimental modeling of cancer treatment. Cancers.
Number of full-text downloads 37

Mallet, Daniel G., Turner, Ian W., & Pettet, Graeme J. (2004) Application of the control volume method to a mathematical model of cell migration. The ANZIAM Journal, 45(E), C891-C904.

Mallet, Daniel G. & de Pillis, Lisette G. (2006) A cellular automata model of tumor-immune system interactions. Journal of Theoretical Biology, 239(3), pp. 334-350.
Number of full-text downloads 549
Number of citations in Scopus 43
Number of citations in Web of Science 38

Mallet, Dann, Bagher-Oskouei, Masoumeh, Farr, Anna Charisse, Simpson, Daniel Peter, & Heymer, Kelly-Jean (2011) A mathematical model of chlamydial infection incorporating spatial movement of chlamydial particles. .
Number of full-text downloads 65

Mallet, Dann G. (2008) Haptotaxis in Tumour Growth and Invasion : A Mathematical Modelling Approach. VDM Verlag Dr. Muller Aktiengesellschaft & Co. KG, Germany.

Mallet, Dann G., Heymer, Kelly-Jean, Rank, Roger G., & Wilson, David P. (2009) Chlamydial infection and spatial ascension of the female genital tract : a novel hybrid cellular automata and continuum mathematical model. FEMS Immunology & Medical Microbiology, 57(2), pp. 173-182.
Number of full-text downloads 20
Number of citations in Scopus 1
Number of citations in Web of Science 1

McBryde, Emma, McElwain, Sean, & Pettitt, Tony (2007) A Stochastic Mathematical Model of Methicillin Resistant Staphylococcus Aureus Transmission in an Intensive Care Unit: Predicting the Impact of Interventions. Journal of Theoretical Biology, 245(3), pp. 470-481.
Number of citations in Scopus 29
Number of citations in Web of Science 25

McCue, Scott W., Bartsch, Thomas, Dyson, Rosemary, Beguerisse-Diaz, Mariano, & Jensen, Oliver (2009) Modelling cell separation during plant organ abscission. The Centre for Plant Integrative Biology, University of Nottingham.

McElwain, D. L. S., Jones, M. B., Fulford, G., Collins, M. J., & Roberts, A. P. (2006) The effect of the lipid layer on tear film behaviour. Bulletin of Mathematical Biology, 68(6), pp. 1355-1381.
Number of citations in Scopus 10
Number of citations in Web of Science 8

McElwain, Sean, Addison-Smith, Beth, & Maini, Philip K. (2008) A simple mechanistic model of sprout spacing in tumour-associated angiogenesis. Journal of Theoretical Biology, 250(1), pp. 1-15.
Number of citations in Scopus 7

McElwain, Sean, Cumming, Benjamin Donald, & Upton, Zee (2009) A mathematical model of wound healing and subsequent scarring. Journal of The Royal Society Interface. (In Press)
Number of citations in Scopus 1

McElwain, Sean & Wilson, David (2005) Diffusion Theory can be Applied to Antibodies Attaching to Ligand Sites. The ANZIAM Journal, 46(4), pp. 495-505.

Mcbryde, Emma & McElwain, Sean (2006) A Mathematical Model Investigating the Impact of an Environmental Reservoir on Prevalence and Control of Vancomycin-Resistant Enterococci. Journal of Infectious Diseases, 193(10), pp. 1473-1474.
Number of citations in Scopus 4

Murphy, Kelly E., Hall, Cameron L., Maini, Philip K., McCue, Scott W., & McElwain, Sean (2012) A fibrocontractive mechanochemical model of dermal wound closure incorporating realistic growth factor kinetics. Bulletin of Mathematical Biology.
Number of full-text downloads 4

Murphy, Kelly E., Hall, Cameron L., McCue, Scott W., & McElwain, D.L. Sean (2011) A two-compartment mechanochemical model of the roles of transforming growth factor-beta and tissue tension in dermal wound healing. Journal of Theoretical Biology, 272(1), pp. 145-159.
Number of full-text downloads 55
Number of citations in Scopus 1
Number of citations in Web of Science 1

Murphy, Kelly E., McCue, Scott W., & McElwain, Sean (2012) Clinical strategies for the alleviation of contractures from a predictive mathematical model of dermal repair. Wound Repair and Regeneration. (In Press)

O

Oqielat, Moa'Ath, Belward, John A., Turner, Ian W., & Loch, B. I. (2007) A Hybrid Clough-Tocher Radial Basis Function Method for Modelling Leaf Surfaces. In MODSIM 2007 International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.
Number of full-text downloads 63
Number of citations in Scopus 1

S

Simpson, Matthew, Baker, Ruth, & McCue, Scott W. (2011) Models of collective cell spreading with variable cell aspect ratio : a motivation for degenerate diffusion models. Physical Review E (PRE), 83, 021901-1 .
Number of full-text downloads 46
Number of citations in Scopus 2
Number of citations in Web of Science 2

Simpson, Matthew & Ellery, Adam (2011) An analytical solution for diffusion and nonlinear uptake of oxygen in a spherical cell. Applied Mathematical Modelling.
Number of full-text downloads 18

Simpson, Matthew, Landman, Kerry A., & Hughes, Barry (2010) Cell invasion with proliferation mechanisms motivated by time-lapse data. Physica A : Statistical Mechanics and its Applications, 389(18), pp. 3779-3790.
Number of full-text downloads 21
Number of citations in Scopus 6
Number of citations in Web of Science 5

Simpson, Matthew, Landman, Kerry A., Hughes, Barry, & Fernando, Anthony (2010) A model for mesoscale patterns in motile populations. Physica A: Statistical Mechanics and its Applications, 389(7), pp. 1412-1424.
Number of full-text downloads 25
Number of citations in Scopus 11
Number of citations in Web of Science 10

Simpson, Matthew, Towne, Chris L., McElwain, Sean, & Upton, Zee (2010) Migration of breast cancer cells : understanding the roles of volume exclusion and cell-to-cell adhesion. Physical Review E (PRE), 82(4), 041901-1---41901-9.
Number of full-text downloads 37
Number of citations in Scopus 7
Number of citations in Web of Science 6

Sofronov, George, Evans, Gareth E., Keith, Jonathan M., & Kroese, Dirk P. (2007) Identifying Change-points in Biological Sequences via Sequential Importance Sampling. In Oxley, Les & Kulasiri, Don (Eds.) MODSIM 2007 International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.
Number of full-text downloads 48

W

Wilson, Cameron J., Pettet, Graeme J., Chen, Gongfa, Mishra, Sanjay K., Steck, Roland, Wullschleger, Martin E., et al. (2006) Is callus formation optimised for fracture stability? A computational study. In 10th Conference of the International Society for Fracture Repair, 22-24 May 2006, Adelaide, Australia.
Number of full-text downloads 83

Y

Yang, Jian-Yi, Yu, Zuguo, & Anh, Vo (2007) Correlations Between Designability and Various Structural Characteristics of Protein Lattice Models. Journal of Chemical Physics, 126(19), pp. 1-12.
Number of citations in Scopus 3
Number of citations in Web of Science 3

Yang, Qianqian, Moroney, Timothy J., Burrage, Kevin, Turner, Ian, & Liu, Fawang (2011) Novel numerical methods for time-space fractional reaction diffusion equations in two dimensions. Australian and New Zealand Industrial and Applied Mathematics Journal, 52, C395-C409.
Number of full-text downloads 41

Yu, Zuguo, Anh, Vo V., Zhou, Yu, & Zhou, Li-Qian (2007) Numerical Sequence Representation of DNA Sequences and Methods To Distinguish Coding And Non-Coding Sequences in a Complete Genome. In Callaos, N., Lesso, W., Zinn, C., & Zmazek, B. (Eds.) 11th World Multi-Conference on Systemics, Cybernetics and Informatics: WMSCI 2007, 8-11 July 2007, Florida, USA.
Number of full-text downloads 142

Yu, Zuguo, Mao, Z., Zhou, Li-Qian, & Anh, Vo V. (2007) A Mutual Information Based Sequence Distance For Vertebrate Phylogeny Using Complete Mitochondrial Genomes. In Third International Conference on Natural Computation (ICNC 2007), 24-27 August 2007, Haikou, China.
Number of full-text downloads 169
Number of citations in Scopus 4

Yu, Zuguo, Zhan, Xiao-Wen, Han, Guo-Sheng, Wang, Roger, Anh, Vo, & Chu, Ka-Hou (2010) Proper Distance Metrics for Phylogenetic Analysis Using Complete Genomes without Sequence Alignment. International Journal of Molecular Sciences, 11(3), pp. 1141-1154.
Number of citations in Scopus 5
Number of citations in Web of Science 4

Yu, Zuguo, Zhou, Li-Qian, Anh, Vo V., Chu, Ka-Hou, Li, C. P., & Chen, Y. J. (2007) Distance-based analysis to reveal vertebrate phylogeny without sequence alignment using complete mitochondrial genomes. In Callaos, N., Lesso, W., Zinn, C., & Zmazek, B. (Eds.) 11th World Multi-Conference on Systemics, Cybernetics and Informatics: WMSCI 2007, 8-11 July 2007, Florida, USA.
Number of full-text downloads 138

Z

Zhou, Li-Qian, Yu, Zuguo, Nie, P. R., Liao, F. F., Anh, Vo V., & Chen, Y. J. (2007) Log-correlation Distance And Fourier Transform With Kullback-Leibler Divergence Distance For Construction Of Vertebrate Phylogeny Using Complete Mitochondrial Genomes. In Third International Conference on Natural Computation (ICNC 2007), 24-27 August 2007, Haikou, China.
Number of full-text downloads 184
Number of citations in Scopus 2

Zhou, Yu, Yu, Zu-Guo, & Anh, Vo V. (2007) Cluster protein structures using recurrence quantification analysis on coordinates of alpha-carbon atoms of proteins. Physics Letters. Section A: General, Atomic and Solid State Physics, 368(3/4), pp. 314-319.
Number of full-text downloads 85
Number of citations in Scopus 6
Number of citations in Web of Science 6

Zhou, Yu, Zhou, Li-Qian, Yu, Zu-Guo, & Anh, Vo V. (2007) Distinguish Coding And Noncoding Sequences In A Complete Genome Using Fourier Transform. In Third International Conference on Natural Computation (ICNC 2007), 24-27 August 2007, Haikou, China.
Number of full-text downloads 117
Number of citations in Web of Science 1

This list was generated on Sat Feb 11 07:26:03 2012 EST.