Items where Subject is "Australian and New Zealand Standard Research Classification > BIOLOGICAL SCIENCES (060000) > BIOCHEMISTRY AND CELL BIOLOGY (060100) > Bioinformatics (060102)"

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Number of items at this level: 32.

Journal Article

An, Jiyuan, Lai, John, Lehman, Melanie, & Nelson, Colleen (2012) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acid Research, 41(2), pp. 727-737.
Number of full-text downloads 42
Number of citations in Scopus 46
Number of citations in Web of Science® 42

An, Jiyuan, Lai, John, Sajjanhar, Atul, Batra, Jyotsna, Wang, Chenwei, & Nelson, Colleen C. (2015) J-Circos : an interactive Circos plotter. Bioinformatics, 31(9), pp. 1463-1465.
Number of full-text downloads 20
Number of citations in Scopus 2
Number of citations in Web of Science® 3

An, Jiyuan, Lai, John, Sajjanhar, Atul, Lehman, Melanie L., & Nelson, Colleen C. (2014) miRPlant : an integrated tool for identification of plant miRNA from RNA sequencing data. BMC Bioinformatics, 15(1), p. 275.
Number of full-text downloads 134
Number of citations in Scopus 4
Number of citations in Web of Science® 4

An, Jiyuan, Lai, John, Wood, David L A, Sajjanhar, Atul, Wang, Chenwei, Tevz, Gregor, et al. (2015) RNASeqBrowser: A genome browser for simultaneous visualization of raw strand specific RNAseq reads and UCSC genome browser custom tracks. BMC Genomics, 16, p. 145.
Number of full-text downloads 18
Number of citations in Web of Science® 2

An, Jiyuan, Liew, Alan Wee-Chung, & Nelson, Colleen (2012) Seed-based biclustering of gene expression data. PLoS ONE, 7(8).
Number of full-text downloads 48
Number of citations in Scopus 3
Number of citations in Web of Science® 1

Anh, Vo, Yang, Jian-Yi, Yu, Zu-Guo, Zhou, Li-Qian, & Zhou, Yu (2008) Human Pol ll promoter recognition based on primary sequences and free energy of dinucleotides. BMC Informatics, 9(113), pp. 1-13.
Number of full-text downloads 50
Number of citations in Scopus 16
Number of citations in Web of Science® 8

Broadbent, J.A., Sampson, D.L., Broszczak, D.A., Upton, Z., & Huygens, F. (2015) Choose wisely: Network, ontology and annotation resources for the analysis of Staphylococcus aureus omics data. International Journal of Medical Microbiology, 305(3), pp. 339-347.
Number of full-text downloads 13
Number of citations in Scopus 1
Number of citations in Web of Science® 1

Cunneen, Monica M., De Castro, Cristina, Kenyon, Johanna, Parrilli, Michelangelo, Reeves, Peter R., Molinaro, Antonio, et al. (2009) The O-specific polysaccharide structure and biosynthetic gene cluster of Yersinia pseudotuberculosis serotype O:11. Carbohydrate Research, 344(12), pp. 1533-1540.
Number of citations in Scopus 13
Number of citations in Web of Science® 14

De Castro, Cristina, Kenyon, Johanna J., Cunneen, Monica M., Molinaro, Antonio, Holst, Otto, Skurnik, Mikael, et al. (2013) The O-specific polysaccharide structure and gene cluster of serotype O:12 of the Yersinia pseudotuberculosis complex, and the identification of a novel L-quinovose biosynthesis gene. Glycobiology, 23(3), pp. 346-353.
Number of citations in Scopus 9
Number of citations in Web of Science® 8

De Castro, Cristina, Kenyon, Johanna J., Cunneen, Monica M., Reeves, Peter R., Molinaro, Antonio, Holst, Otto, et al. (2010) Genetic characterisation and structural analysis of the O-specific polysaccharide of Yersinia pseudotuberculosis serotype O:1c. Innate Immunity, 17(2), pp. 183-190.
Number of citations in Scopus 9
Number of citations in Web of Science® 8

Fang, Xiaodong, Seim, Inge, Huang, Zhiyong, Gerashchenko, Maxim V., Xiong, Zhiqiang, Turanov, Anton A., et al. (2014) Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes. Cell Reports, 8(5), pp. 1354-1364.
Number of citations in Scopus 15
Number of citations in Web of Science® 13

Haass-Koffler, Carolina L., Naeemuddin, Mohammad, & Bartlett, Selena E. (2012) An analytical tool that quantifies cellular morphology changes from three-dimensional fluorescence images. Journal of Visualized Experiments, pp. 4233-4237.
Number of citations in Scopus 1
Number of citations in Web of Science® 1

Han, Guo-Sheng, Yu, Zu-Guo, Anh, Vo, Krishnajith, Anaththa P.D., & Tian, Yu-Chu (2013) An ensemble method for predicting subnuclear localizations from primary protein structures. PLOS ONE, 8(2), e57225:1-e57225:14.
Number of full-text downloads 144
Number of citations in Scopus 13
Number of citations in Web of Science® 10

Holt, Kathryn E., Hamidian, Mohammad, Kenyon, Johanna J., Wynn, Matthew T., Hawkey, Jane, Pickard, Derek, et al. (2015) Genome Sequence of Acinetobacter baumannii Strain A1, an Early Example of Antibiotic-Resistant Global Clone 1. Genome sequence of Acinetobacter baumannii strain A1, an early example of antibiotic-resistant global clone 1, 3(2), e00032-15.

Kenyon, Johanna J., De Castro, Cristina, Cunneen, Monica M., Reeves, Peter R., Molinaro, Antonio, Holst, Otto, et al. (2011) The genetics and structure of the O-specific polysaccharide of Yersinia pseudotuberculosis serotype O:10 and its relationship with Escherichia coli O111 and Salmonella enterica O35. Glycobiology, 21(9), pp. 1131-1139.
Number of citations in Scopus 8
Number of citations in Web of Science® 9

Kenyon, Johanna J. & Hall, Ruth M. (2013) Variation in the complex carbohydrate biosynthesis loci of Acinetobacter baumannii genomes. PLoS ONE, 8(4), e62160.
Number of full-text downloads 11
Number of citations in Scopus 32
Number of citations in Web of Science® 32

Kenyon, Johanna J., Marzaioli, Alberto M., De Castro, Cristina, & Hall, Ruth M. (2015) 5,7-di-N-acetyl-acinetaminic acid: A novel non-2-ulosonic acid found in the capsule of an Acinetobacter baumannii isolate. Glycobiology, 25(6), pp. 644-654.
Number of citations in Scopus 5
Number of citations in Web of Science® 6

Kenyon, Johanna J., Marzaioli, Alberto M., Hall, Ruth M., & De Castro, Cristina (2014) Structure of the K2 capsule associated with the KL2 gene cluster of Acinetobacter baumannii. Glycobiology, 24(6), pp. 554-563.
Number of citations in Scopus 16
Number of citations in Web of Science® 16

Kenyon, Johanna J., Nigro, Steven J., & Hall, Ruth M. (2014) Variation in the OC locus of Acinetobacter baumannii genomes predicts extensive structural diversity in the Lipooligosaccharide. PLoS ONE, 9(9), e107833.
Number of citations in Scopus 7
Number of citations in Web of Science® 7

Seim, Inge, Carter, Shea L., Herington, Adrian C., & Chopin, Lisa K. (2009) The proximal first exon architecture of the murine ghrelin gene is highly similar to its human orthologue. BMC Research Notes, 2(85).
Number of full-text downloads 92
Number of citations in Scopus 3

Shashkov, Alexander S., Kenyon, Johanna J., Arbatsky, Nikolay P., Shneider, Mikhail M., Popova, Anastasiya V., Miroshnikov, Konstantin A., et al. (2015) Structures of three different neutral polysaccharides of Acinetobacter baumannii, NIPH190, NIPH201, and NIPH615, assigned to K30, K45, and K48 capsule types, respectively, based on capsule biosynthesis gene clusters. Carbohydrate Research, 417, pp. 81-88.
Number of citations in Scopus 1
Number of citations in Web of Science® 2

Towsey, Michael W., Timms, Peter, Hogan, James M., & Mathews, Sarah A. (2008) The cross-species prediction of bacterial promoters using a support vector machine. Computational Biology and Chemistry, 32(5), pp. 359-366.
Number of citations in Scopus 9
Number of citations in Web of Science® 5

Wang, Chenwei, Taciroglu, Alperen, Maetschke, Stefan R, Nelson, Colleen C., Ragan, Mark A, & Davis, Melissa J (2012) mCOPA: analysis of heterogeneous features in cancer expression data. Journal of Clinical Bioinformatics, 2(1), p. 22.
Number of full-text downloads 77
Number of citations in Scopus 8

Wiliem, Arnold, Sanderson, Conrad, Wong, Yongkang, Hobson, Peter, Minchin, Rodney F., & Lovell, Brian C. (2014) Automatic classification of human epithelial type 2 cell indirect immunofluorescence images using cell pyramid matching. Pattern Recognition, 47(7), pp. 2315-2324.
Number of full-text downloads 2
Number of citations in Scopus 13
Number of citations in Web of Science® 7

Yu, Zu-Guo, Chu, Ka-Hou, Li, Chi Pang, Anh, Vo, Zhou, Li-Qian, & Wang, Roger (2010) Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model. BMC Evolutionary Biology, 10(192), pp. 1-11.
Number of citations in Scopus 17
Number of citations in Web of Science® 15

Conference Paper

Anh, Vo, Chu, K, Li, C, Yu, Zu-Guo, & Zhou, Li-Qian (2008) Phylogenetic analysis of polyomaviruses based on their complete genomes. In Kellenberger, P (Ed.) Natural Computation, 2008. ICNC '08. Fourth International Conference on, IEE Computer Society, China, Shandong, Jinan, pp. 80-84.
Number of citations in Scopus 3
Number of citations in Web of Science® 3

Anh, Vo, Yang, Jian-Yi, & Yu, Zu-Guo (2008) Protein structure classification based on chaos game representation. In Kellenberger, P (Ed.) The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008), 18 - 20 October 2008, China, Shandong, Jinan.
Number of citations in Scopus 2
Number of citations in Web of Science® 1

Anh, Vo, Yu, Zu-Guo, & Zhou, Yu (2008) Protein structure classification using local holder exponents estimated by wavelet transfom. In Kellenberger, P (Ed.) The Proceedings of the Fourth International Conference on Natural Computation (ICNC 2008), 18 - 20 October 2008, China, Shandong, Jinan.

Other

Bowles, Christopher J. & Hogan, James M. (2014) Supplementary information : weighted tree kernels for sequence analysis. Proceedings of ESANN 2014. (In Press)
Number of full-text downloads 37

Hogan, James M. & Peut, Timothy (2014) Supplementary material : large scale read classification for next generation sequencing. International Conference on Computational Science. (In Press)
Number of full-text downloads 35

This list was generated on Sat Aug 20 19:26:43 2016 AEST.