Items where Subject is "Australian and New Zealand Standard Research Classification > BIOLOGICAL SCIENCES (060000) > GENETICS (060400) > Genomics (060408)"

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Book Chapter

Keith, Jonathan (2008) Sequence segmentation. In Keith, J (Ed.) Bioinformatics, Volume 1 : Data, Sequence Analysis and Evolution. Humana Press (Springer), United States of Amercia, pp. 207-229.
Number of citations in Scopus 6

Swedberg, Joakim E., Veer, Simon J. De, & Harris, Jonathan M. (2012) Natural, engineered and synthetic inhibitors of kallikrein-related peptidases. In Magdolen, V., Sommerhoff, C.P., Fritz, H., & Schmitt, M. (Eds.) Kallikrein-Related Peptidases - Volume 1 : Characterization, regulation, and interactions within the protease web. Walter de Gruyter GmbH, Berlin, pp. 141-160.

Journal Article

Adams, Peter, Keith, Jonathan, Mattick, John, & Stephen, Stuart (2008) Delineating slowly and rapidly evolving fractions of the Drosophila genome. Journal of Computational Biology, 15(4), pp. 407-430.
Number of citations in Scopus 16
Number of citations in Web of Science® 14

Bonilla, Carolina, Lewis, Sarah J., Martin, Richard M., Donovan, Jenny L., Hamdy, Freddie C., Neal, David E., et al. (2016) Pubertal development and prostate cancer risk: Mendelian randomization study in a population-based cohort. BMC Medicine, 14(1).
Number of full-text downloads 3
Number of citations in Scopus 2
Number of citations in Web of Science® 4

Campbell, Bronwyn E., Nagaraj, Shivashankar H., Hu, Min, Zhong, Weiwei, Sternberg, Paul W., Ong, Eng K., et al. (2008) Gender-enriched transcripts in Haemonchus contortus – predicted functions and genetic interactions based on comparative analyses with Caenorhabditis elegans. International Journal for Parasitology, 38(1), pp. 65-83.

Chan, E. K. F., Nagaraj, S. H., & Reverter, A. (2010) The evolution of tropical adaptation: Comparing taurine and zebu cattle. Animal Genetics, 41(5), pp. 467-477.

De Jager, Nadia, Hudson, Nicholas J., Reverter, Antonio, Wang, Yong-Hong, Nagaraj, Shivashankar H., Cafe, Linda M., et al. (2011) Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle. Physiological Genomics, 43(9), pp. 467-478.
Number of citations in Scopus 20
Number of citations in Web of Science® 21

Fang, Xiaodong, Seim, Inge, Huang, Zhiyong, Gerashchenko, Maxim V., Xiong, Zhiqiang, Turanov, Anton A., et al. (2014) Adaptations to a subterranean environment and longevity revealed by the analysis of mole rat genomes. Cell Reports, 8(5), pp. 1354-1364.
Number of citations in Scopus 25
Number of citations in Web of Science® 24

Franchini, Paolo, Fruciano, Carmelo, Spreitzer, Maria L., Jones, Julia C., Elmer, Kathryn R., Henning, Frederico, et al. (2014) Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes. Molecular Ecology, 23(7), pp. 1828-1845.
Number of citations in Scopus 41
Number of citations in Web of Science® 42

Fruciano, Carmelo, Franchini, Paolo, Kovacova, Viera, Elmer, Kathryn R., Henning, Frederico, & Meyer, Axel (2016) Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish. Nature Communications, 7, p. 12736.
Number of full-text downloads 3
Number of citations in Scopus 4
Number of citations in Web of Science® 4

Galdiero, Massimiliano, Ni, Guoying, Chen, Shu, Yang, Yuedong, Cummins, Scott F., Zhan, Jian, et al. (2016) Investigation the Possibility of Using Peptides with a Helical Repeating Pattern of Hydro-Phobic and Hydrophilic Residues to Inhibit IL-10. PLOS ONE, 11(4), e0153939-e0153939.
Number of full-text downloads 3
Number of citations in Scopus 1
Number of citations in Web of Science® 1

Götz, Stefan, García-Gómez, Juan Miguel, Terol, Javier, Williams, Tim D., Nagaraj, Shivashankar H., Nueda, María José, et al. (2008) High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Research, 36(10), pp. 3420-3435.
Number of full-text downloads 1
Number of citations in Scopus 1,105
Number of citations in Web of Science® 1,071

Gu, Quan, Nagaraj, Shivashankar H., Hudson, Nicholas J., Dalrymple, Brian P., & Reverter, Antonio (2011) Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle. BMC Genomics, 12(23), pp. 1-13.
Number of full-text downloads 1
Number of citations in Scopus 11
Number of citations in Web of Science® 9

Gunter, Helen M., Fan, Shaohua, Xiong, Fan, Franchini, Paolo, Fruciano, Carmelo, & Meyer, Axel (2013) Shaping development through mechanical strain: The transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Molecular Ecology, 22(17), pp. 4516-4531.
Number of citations in Scopus 32
Number of citations in Web of Science® 32

Harsha, H.C., Suresh, Shubha, Amanchy, Ramars, Deshpande, Nandan, Shanker, K., Yatish, A.J., et al. (2005) [Correspondence] A manually curated functional annotation of the human X chromosome. Nature Genetics, 37(4), pp. 331-332.
Number of citations in Scopus 11
Number of citations in Web of Science® 6

Hernandez Sanchez, Julio, Tarka, M, Akesson, M, Hasselquist, D, Bensch, S, & Hansson, B (2010) A strong quantitative trait locus for wing length on chromosome 2 in a wild population of great reed warblers. Proceedings of the Royal Society B: Biological Sciences, 277(1692), pp. 2361-2369.
Number of citations in Scopus 27
Number of citations in Web of Science® 28

Hudson, Nicholas J., Gu, Quan, Nagaraj, Shivashankar H., Ding, Yong-Sheng, Dalrymple, Brian P., & Reverter, Antonio (2011) Eukaryotic evolutionary transitions are associated with extreme codon bias in functionally-related proteins. PLoS ONE, 6(9), Article number-e25457.
Number of full-text downloads 1
Number of citations in Scopus 8
Number of citations in Web of Science® 8

Kenyon, Johanna J., Holt, Kathryn E., Pickard, Derek, Dougan, Gordon, & Hall, Ruth M. (2014) Insertions in the OCL1 locus of Acinetobacter baumannii lead to shortened lipooligosaccharides. Research in Microbiology, 165(6), pp. 472-475.
Number of full-text downloads 4
Number of citations in Scopus 7
Number of citations in Web of Science® 8

Kumar, Dhirendra, Yadav, Amit Kumar, Kadimi, Puneet Kumar, Nagaraj, Shivashankar H., Grimmond, Sean M., & Dash, Debasis (2013) Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using Genosuite, an automated multi-algorithmic pipeline. Molecular & Cellular Proteomics, 12(11), pp. 3388-3397.
Number of full-text downloads 1
Number of citations in Scopus 24
Number of citations in Web of Science® 22

MacRae, Sheila L., Zhang, Quanwei, Lemetre, Christophe, Seim, Inge, Calder, Robert B., Hoeijmakers, Jan, et al. (2015) Comparative analysis of genome maintenance genes in naked mole rat, mouse, and human. Aging Cell, 14(2), pp. 288-291.
Number of full-text downloads 23
Number of citations in Scopus 9
Number of citations in Web of Science® 6

Mitchell, Candice, Hovis, Kelley, Bavoil, Patrik, Myers, Garry, Carrasco, Jose, & Timms, Peter (2010) Comparison of koala LPCoLN and human strains of Chlamydia pneumoniae highlights extended genetic diversity in the species. BMC Genomics, 11(442), pp. 1-10.
Number of full-text downloads 152
Number of citations in Scopus 18
Number of citations in Web of Science® 19

Mitre, Edward, Rohrscheib, Chelsie E., Frentiu, Francesca D., Horn, Emilie, Ritchie, Fiona K., van Swinderen, Bruno, et al. (2016) Intensity of Mutualism Breakdown Is Determined by Temperature Not Amplification of Wolbachia Genes. PLOS Pathogens, 12(9), e1005888-e1005888.

Nagaraj, Shivashankar H, Ingham, Aaron, & Reverter, Antonio (2010) The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome. BMC Genomics, 11(Suppl 4), S23-S23.
Number of full-text downloads 1
Number of citations in Scopus 5
Number of citations in Web of Science® 4

Nagaraj, Shivashankar H., Deshpande, Nandan, Gasser, Robin B., & Ranganathan, Shoba (2007) ESTExplorer: An expressed sequence tag (EST) assembly and annotation platform. Nucleic Acids Research, 35(Suppl 2), W143-W147.
Number of full-text downloads 1
Number of citations in Scopus 50
Number of citations in Web of Science® 44

Nagaraj, Shivashankar H., Gasser, Robin B., & Ranganathan, Shoba (2006) A hitchhiker's guide to expressed sequence tag (EST) analysis. Briefings in Bioinformatics, 8(1), pp. 6-21.
Number of citations in Scopus 168
Number of citations in Web of Science® 133

Nagaraj, Shivashankar H., Harsha, H.C., Reverter, Antonio, Colgrave, Michelle L., Sharma, Rakesh, Andronicos, Nicholas, et al. (2012) Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep. Journal of Proteomics, 75(7), pp. 2141-2152.
Number of citations in Scopus 8
Number of citations in Web of Science® 9

Nagaraj, Shivashankar H., Waddell, Nicola, Madugundu, Anil K., Wood, Scott, Jones, Alun, Mandyam, Ramya A., et al. (2015) PGTools: A software suite for proteogenomic data analysis and visualization. Journal of Proteome Research, 14(5), pp. 2255-2266.

Nelson, Leigh A., Cameron, Stephen L., & Yeates, David K. (2012) The complete mitochondrial genome of the flesh fly, Sarcophaga impatiens Walker (Diptera: Sarcophagidae). Mitochondrial DNA, 23(1), pp. 42-43.
Number of citations in Scopus 14
Number of citations in Web of Science® 19

Nelson, Leigh A., Cameron, Stephen L., & Yeates, David K. (2011) The complete mitochondrial genome of the gall-forming fly, Fergusonina taylori(Nelson and Yeates) (Diptera: Fergusoninidae). Mitochondrial DNA, 22(5-6), pp. 197-199.
Number of citations in Scopus 8
Number of citations in Web of Science® 8

Nguyen, Tuan Viet, Jung, Hyungtaek, Nguyen, Thanh Minh, Hurwood, David, & Mather, Peter (2016) Evaluation of potential candidate genes involved in salinity tolerance in striped catfish (Pangasianodon hypophthalmus) using an RNA-Seq approach. Marine Genomics, 25, pp. 75-88.
Number of citations in Scopus 6
Number of citations in Web of Science® 6

Noune, Christopher & Hauxwell, Caroline (2016) Comparative analysis of HaSNPV-AC53 and derived strains. Viruses, 8(11), Article no. 280.
Number of full-text downloads 24
Number of citations in Scopus 1

Patch, Ann-Marie, Christie, Elizabeth L., Etemadmoghadam, Dariush, Garsed, Dale W., George, Joshy, Fereday, Sian, et al. (2015) Whole–genome characterization of chemoresistant ovarian cancer. Nature, 521(7553), pp. 489-494.
Number of citations in Scopus 196
Number of citations in Web of Science® 182

Peri, Suraj, Navarro, J. Daniel, Kristiansen, Troels Z., Amanchy, Ramars, Surendranath, Vineeth, Muthusamy, Babylakshmi, et al. (2004) Human protein reference database as a discovery resource for proteomics. Nucleic Acids Research, 32(Supp 1), D497-D501.
Number of citations in Scopus 326
Number of citations in Web of Science® 281

Ranganathan, Shoba, Nagaraj, Shivashankar H., Hu, Min, Strube, Christina, Schnieder, Thomas, & Gasser, Robin B. (2007) A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus. BMC Genomics, 8(311).
Number of full-text downloads 1
Number of citations in Scopus 15
Number of citations in Web of Science® 16

Rautanen, Anna, Pirinen, Matti, Mills, Tara C., Rockett, Kirk A., Strange, Amy, Ndungu, Anne W., et al. (2016) Polymorphism in a lincRNA associates with a doubled risk of pneumococcal bacteremia in Kenyan children. American Journal of Human Genetics, 98(6), pp. 1092-1100.
Number of citations in Scopus 2
Number of citations in Web of Science® 3

Robinson, P.C., Leo, P.J., Pointon, J.J., Harris, J., Cremin, K., Bradbury, L.A., et al. (2016) The genetic associations of acute anterior uveitis and their overlap with the genetics of ankylosing spondylitis. Genes and Immunity, 17(1), pp. 46-51.
Number of citations in Scopus 1
Number of citations in Web of Science® 1

Robson, K.J.H., Merryweather-Clarke, A.T., Pointon, J.J., Shearman, J.D., Halsall, D.J., Kelly, A., et al. (2000) Diagnosis and management of haemochromatosis since the discovery of the HFE gene: A European experience. British Journal of Haematology, 108(1), pp. 31-39.
Number of citations in Scopus 24

Saunders, Edward J., Dadaev, Tokhir, Leongamornlert, Daniel A., Olama, Ali Amin Al, Benlloch, Sara, Giles, Graham G, et al. (2016) Gene and pathway level analyses of germline DNA-repair gene variants and prostate cancer susceptibility using the iCOGS-genotyping array. British Journal of Cancer, 114(8), pp. 945-952.
Number of full-text downloads 2
Number of citations in Scopus 3
Number of citations in Web of Science® 3

Scarpa, Aldo, Chang, David K., Nones, Katia, Corbo, Vincenzo, Patch, Ann-Marie, Bailey, Peter, et al. (2017) Whole-genome landscape of pancreatic neuroendocrine tumours. Nature, 543(7643), pp. 65-71.

Seim, Inge, Fang, Xiaodong, Xiong, Zhiqiang, Lobanov, Alexey V., Huang, Zhiyong, Ma, Siming, et al. (2013) Genome analysis reveals insights into physiology and longevity of the Brandt’s bat Myotis brandtii. Nature Communications, 4(2212), pp. 1-8.
Number of citations in Scopus 61
Number of citations in Web of Science® 53

Seim, Inge, Jeffery, Penny L., Thomas, Patrick B., Nelson, Colleen C., & Chopin, Lisa K. (2017) Whole-genome sequence of the metastatic PC3 and LNCaP human prostate cancer cell lines. G3 (Bethesda), 7(6), pp. 1731-1741.
Number of full-text downloads 19

Surm, Joachim M., Prentis, Peter J., & Pavasovic, Ana (2015) Comparative analysis and distribution of Omega-3 lcPUFA Biosynthesis genes in marine molluscs. PLoS ONE, 10(8), e0136301.
Number of full-text downloads 27
Number of citations in Scopus 7
Number of citations in Web of Science® 5

White-Al Habeeb, Nicole M.A., Linh, T. Ho, Olkhov-Mitsel, Ekaterina, Kron, Ken, Pethe, Vaijayanti, Lehman, Melanie, et al. (2014) Integrated analysis of epigenomic and genomic changes by DNA methylation dependent mechanisms provides potential novel biomarkers for prostate cancer. Oncotarget, 5(17), pp. 7858-7869.
Number of full-text downloads 178
Number of citations in Scopus 3

Yi, Y, Srinivas, Nandana, Case, Thomas, Nelson, Colleen, Radmilovic, T, Matusik, Robert, et al. (2009) Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of prostate cancer. Molecular Cytogenetics, 2(18), pp. 1-9.
Number of citations in Scopus 11
Number of citations in Web of Science® 8

Zhang, Guolong, Shao, Minhua, Li, Zhixiu, Gu, Yong, Du, Xufeng, Wang, Xiuli, et al. (2016) Genetic spectrum of dyschromatosis symmetrica hereditaria in Chinese patients including a novel nonstop mutation in ADAR1 gene. BMC Medical Genetics, 17(14), pp. 1-6.
Number of full-text downloads 2
Number of citations in Scopus 4
Number of citations in Web of Science® 2

Zhang, Tuo, Faraggi, Eshel, Li, Zhixiu, & Zhou, Yaoqi (2016) Intrinsic disorder and semi-disorder prediction by SPINE-D. Prediction of Protein Secondary Structure, 1484, pp. 159-174.

Zhao, Huiying, Nyholt, Dale R., Yang, Yuanhao, Wang, Jihua, & Yang, Yuedong (2017) Improving the detection of pathways in genome-wide association studies by combined effects of SNPs from Linkage Disequilibrium blocks. Scientific Reports, 7(1).
Number of full-text downloads 4

Conference Paper

Li, Zhixiu, Haynes, Katelin, Thomas, Gethin P., Kenna, Tony J., Leo, Paul J., & Brown, Matthew A. (2016) Epigenetic and Expression Analysis of Ankylosing Spondylitis Association Loci Point to Key Cell Types Driving Disease. In 2016 ACR/ARHP Annual Meeting, November 11-16, 2016, Washington DC.
Number of full-text downloads 6

Li, Zhixiu, Servet, Akar, Yarkan, Handan, Cetin, Pinar, Can, Gercek, Kenar, Gokce, et al. (2016) Rare Mediterranean Fever (MEFV) Gene Polymorphisms Are Associated with Ankylosing Spondylitis in Turkish and Iranian Population. In ACR/ARHP Annual Meeting, November 11-16, 2016, Washington DC.
Number of full-text downloads 6

Conference Item

Prasolova, Nina, Bradbury, Stephanie J., & Jefferson, Osmat Azzam (2014) QUT Library advances the use of open public tools to navigate genetic inventions and builds research networks. In Research Showcase : Opportunities with ACIAR and the Rural Research & Development Corporations, 21 February, 2014, Queensland University of Technology, Brisbane, Queensland. (Unpublished)
Number of full-text downloads 41

This list was generated on Sun Jul 23 10:18:06 2017 AEST.