Multilevel rejection sampling for approximate Bayesian computation

, Baker, Ruth, & (2018) Multilevel rejection sampling for approximate Bayesian computation. Computational Statistics and Data Analysis, 28(6), pp. 1-16.

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Description

Likelihood-free methods, such as approximate Bayesian computation, are powerful tools for practical inference problems with intractable likelihood functions. Markov chain Monte Carlo and sequential Monte Carlo variants of approximate Bayesian computation can be effective techniques for sampling posterior distributions in an approximate Bayesian computation setting. However, without careful consideration of convergence criteria and selection of proposal kernels, such methods can lead to very biased inference or computationally inefficient sampling. In contrast, rejection sampling for approximate Bayesian computation, despite being computationally intensive, results in independent, identically distributed samples from the approximated posterior. An alternative method is proposed for the acceleration of likelihood-free Bayesian inference that applies multilevel Monte Carlo variance reduction techniques directly to rejection sampling. The resulting method retains the accuracy advantages of rejection sampling while significantly improving the computational efficiency.

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22 citations in Scopus
14 citations in Web of Science®
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ID Code: 223518
Item Type: Contribution to Journal (Journal Article)
Refereed: Yes
ORCID iD:
Warne, Davidorcid.org/0000-0002-9225-175X
Simpson, Mattheworcid.org/0000-0001-6254-313X
Measurements or Duration: 16 pages
Keywords: Bayesian inference, Multilevel Monte Carlo, approximate Bayesian computation, likelihood-free methods, rejection sampling
DOI: 10.1016/j.csda.2018.02.009
ISSN: 0167-9473
Pure ID: 33338651
Divisions: Past > Institutes > Institute of Health and Biomedical Innovation
Past > QUT Faculties & Divisions > Science & Engineering Faculty
Current > Research Centres > High Performance Computing and Research Support
Funding:
Copyright Owner: Consult author(s) regarding copyright matters
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Deposited On: 06 Nov 2021 17:55
Last Modified: 06 Jun 2024 23:43